Gene annotation
Transcriptome id Sobic.001G216600.1
Synonym Sb01g019076
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WYC9
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF82
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G45530 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g01490.2 : zinc finger, C3HC4 type, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017601 , Zm00025a006569
Brachypodium KQJ97141 , KQJ97140
Barley HORVU1Hr1G041990.2 , HORVU1Hr1G041990.3 , HORVU1Hr1G041990.1 , HORVU1Hr1G041990.6 , HORVU1Hr1G041990.7 , HORVU1Hr1G041990.4 , HORVU1Hr1G041990.5
Wheat TraesCS1A02G158400 , TraesCS1A02G158400 , TraesCS1D02G155700 , TraesCS1D02G155700 , TraesCS1B02G174400
Populus -


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cDNA sequences
Sobic.001G216600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G195400 FHA domain containing protein, putative, expressed -
2 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
3 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
4 Sobic.003G437500 syntaxin 6, putative, expressed -
5 Sobic.004G119000 OsFBK6 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
7 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
8 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
9 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
10 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
11 Sobic.003G093600 methyltransferase, putative, expressed -
12 Sobic.003G380500 expressed protein -
13 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
14 Sobic.001G350501 - K11253: histone H3
15 Sobic.001G179000 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
16 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
17 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
18 Sobic.002G157200 expressed protein -
19 Sobic.009G183500 expressed protein -
20 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C


Gene co-expression network
sample Sobic001G216600 Sobic001G216600 Sobic007G195400 Sobic007G195400 Sobic001G216600--Sobic007G195400 Sobic001G309100 Sobic001G309100 Sobic001G216600--Sobic001G309100 Sobic009G164900 Sobic009G164900 Sobic001G216600--Sobic009G164900 Sobic003G437500 Sobic003G437500 Sobic001G216600--Sobic003G437500 Sobic004G119000 Sobic004G119000 Sobic001G216600--Sobic004G119000 Sobic004G150400 Sobic004G150400 Sobic001G216600--Sobic004G150400 Sobic002G334600 Sobic002G334600 Sobic001G216600--Sobic002G334600 Sobic002G272800 Sobic002G272800 Sobic001G216600--Sobic002G272800 Sobic004G349100 Sobic004G349100 Sobic001G216600--Sobic004G349100 Sobic003G359300 Sobic003G359300 Sobic007G195400--Sobic003G359300 Sobic004G061900 Sobic004G061900 Sobic007G195400--Sobic004G061900 Sobic008G034600 Sobic008G034600 Sobic007G195400--Sobic008G034600 Sobic007G191100 Sobic007G191100 Sobic007G195400--Sobic007G191100 Sobic006G129700 Sobic006G129700 Sobic007G195400--Sobic006G129700 Sobic003G093600 Sobic003G093600 Sobic007G195400--Sobic003G093600 Sobic007G195400--Sobic001G216600 Sobic002G058300 Sobic002G058300 Sobic007G195400--Sobic002G058300 Sobic003G115100 Sobic003G115100 Sobic007G195400--Sobic003G115100 Sobic001G038100 Sobic001G038100 Sobic001G309100--Sobic001G038100 Sobic003G024800 Sobic003G024800 Sobic001G309100--Sobic003G024800 Sobic003G101300 Sobic003G101300 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic010G071200 Sobic010G071200 Sobic001G309100--Sobic010G071200 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100 Sobic002G007200 Sobic002G007200 Sobic009G164900--Sobic002G007200 Sobic003G380500 Sobic003G380500 Sobic009G164900--Sobic003G380500 Sobic009G164900--Sobic001G216600 Sobic003G356200 Sobic003G356200 Sobic009G164900--Sobic003G356200 Sobic001G217100 Sobic001G217100 Sobic009G164900--Sobic001G217100 Sobic004G229100 Sobic004G229100 Sobic009G164900--Sobic004G229100 Sobic009G011500 Sobic009G011500 Sobic009G164900--Sobic009G011500 Sobic009G164900--Sobic007G195400 Sobic002G157200 Sobic002G157200 Sobic009G164900--Sobic002G157200 Sobic001G028400 Sobic001G028400 Sobic003G437500--Sobic001G028400 Sobic001G056200 Sobic001G056200 Sobic003G437500--Sobic001G056200 Sobic006G088100 Sobic006G088100 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic004G013600 Sobic004G013600 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic004G263900 Sobic004G263900 Sobic003G437500--Sobic004G263900 Sobic003G437500--Sobic003G359300 Sobic004G119000--Sobic004G150400 Sobic010G280100 Sobic010G280100 Sobic004G119000--Sobic010G280100 Sobic001G291100 Sobic001G291100 Sobic004G119000--Sobic001G291100 Sobic003G185200 Sobic003G185200 Sobic004G119000--Sobic003G185200 Sobic004G119000--Sobic002G272800 Sobic009G087800 Sobic009G087800 Sobic004G119000--Sobic009G087800 Sobic010G268300 Sobic010G268300 Sobic004G119000--Sobic010G268300 Sobic002G365100 Sobic002G365100 Sobic004G119000--Sobic002G365100 Sobic007G205800 Sobic007G205800 Sobic004G119000--Sobic007G205800 Sobic004G150400--Sobic004G119000 Sobic010G055500 Sobic010G055500 Sobic004G150400--Sobic010G055500 Sobic004G150400--Sobic007G205800 Sobic004G150400--Sobic002G272800 Sobic004G150400--Sobic010G071200 Sobic004G150400--Sobic001G028400 Sobic004G150400--Sobic006G088100 Sobic004G150400--Sobic003G093600 Sobic006G109300 Sobic006G109300 Sobic004G150400--Sobic006G109300 Sobic002G223300 Sobic002G223300 Sobic002G334600--Sobic002G223300 Sobic009G030300 Sobic009G030300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G334600--Sobic002G157200 Sobic002G272800--Sobic004G150400 Sobic002G272800--Sobic006G088100 Sobic002G272800--Sobic006G109300 Sobic003G074000 Sobic003G074000 Sobic002G272800--Sobic003G074000 Sobic002G272800--Sobic003G437500 Sobic002G272800--Sobic004G119000 Sobic002G272800--Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic002G272800--Sobic010G033400 Sobic002G272800--Sobic001G309100 Sobic004G349100--Sobic003G024800 Sobic004G349100--Sobic001G350501 Sobic001G179000 Sobic001G179000 Sobic004G349100--Sobic001G179000 Sobic009G034400 Sobic009G034400 Sobic004G349100--Sobic009G034400 Sobic004G349100--Sobic001G309100 Sobic004G349100--Sobic003G101300 Sobic004G349100--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic004G349100--Sobic005G000800 Sobic004G349100--Sobic007G195400
Octagon: transcription factors


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