Gene annotation
Transcriptome id Sobic.006G038400.1,Sobic.006G038400.2
Synonym Sb06g006510
Functional annotation YL1 nuclear protein C-terminal domain containing protein, expressed
UniProt C5YDS6 , A0A1B6PK03
Pfam PF08265
Panther DB PTHR31200 PTHR31200:SF1
NCBI CDD KOG4137; Uncharacterized conserved protein
KEGG Orthology K11667; INO80C, INO80 complex subunit C
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006338chromatin remodeling


Orthologs (automatic annotation)
TAIR AT4G38495 : -
RAP-DB (Rice) LOC_Os04g20590.1 : YL1 nuclear protein C-terminal domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G038400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
2 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
3 Sobic.009G140700 PHD finger protein, putative, expressed -
4 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
5 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
6 Sobic.009G114800 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
7 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
8 Sobic.007G079700 pentatricopeptide, putative, expressed -
9 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
10 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
11 Sobic.007G007900 mago nashi, putative, expressed K12877: protein mago nashi
12 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
13 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
14 Sobic.006G109300 protein binding protein, putative, expressed -
15 Sobic.001G291100 tetraspanin family protein, putative, expressed -
16 Sobic.004G083700 expressed protein -
17 Sobic.004G119000 OsFBK6 - F-box domain and kelch repeat containing protein, expressed -
18 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
19 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
20 Sobic.003G437500 syntaxin 6, putative, expressed -


Gene co-expression network
sample Sobic006G038400 Sobic006G038400 Sobic003G045400 Sobic003G045400 Sobic006G038400--Sobic003G045400 Sobic009G232700 Sobic009G232700 Sobic006G038400--Sobic009G232700 Sobic009G140700 Sobic009G140700 Sobic006G038400--Sobic009G140700 Sobic004G150400 Sobic004G150400 Sobic006G038400--Sobic004G150400 Sobic004G305600 Sobic004G305600 Sobic006G038400--Sobic004G305600 Sobic009G114800 Sobic009G114800 Sobic006G038400--Sobic009G114800 Sobic008G062000 Sobic008G062000 Sobic006G038400--Sobic008G062000 Sobic007G079700 Sobic007G079700 Sobic006G038400--Sobic007G079700 Sobic001G512600 Sobic001G512600 Sobic006G038400--Sobic001G512600 Sobic001G467000 Sobic001G467000 Sobic003G045400--Sobic001G467000 Sobic006G242300 Sobic006G242300 Sobic003G045400--Sobic006G242300 Sobic010G211300 Sobic010G211300 Sobic003G045400--Sobic010G211300 Sobic008G139700 Sobic008G139700 Sobic003G045400--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic004G072800 Sobic004G072800 Sobic003G045400--Sobic004G072800 Sobic003G045400--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic003G045400--Sobic001G143500 Sobic001G107500 Sobic001G107500 Sobic009G232700--Sobic001G107500 Sobic003G298100 Sobic003G298100 Sobic009G232700--Sobic003G298100 Sobic009G022200 Sobic009G022200 Sobic009G232700--Sobic009G022200 Sobic008G175800 Sobic008G175800 Sobic009G232700--Sobic008G175800 Sobic007G205800 Sobic007G205800 Sobic009G232700--Sobic007G205800 Sobic001G368400 Sobic001G368400 Sobic009G232700--Sobic001G368400 Sobic001G131800 Sobic001G131800 Sobic009G232700--Sobic001G131800 Sobic003G324000 Sobic003G324000 Sobic009G232700--Sobic003G324000 Sobic010G056200 Sobic010G056200 Sobic009G232700--Sobic010G056200 Sobic001G010600 Sobic001G010600 Sobic009G140700--Sobic001G010600 Sobic007G086500 Sobic007G086500 Sobic009G140700--Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic009G140700--Sobic002G058300 Sobic005G000800 Sobic005G000800 Sobic009G140700--Sobic005G000800 Sobic009G140700--Sobic003G045400 Sobic009G140700--Sobic008G139700 Sobic009G140700--Sobic010G211300 Sobic001G009800 Sobic001G009800 Sobic009G140700--Sobic001G009800 Sobic001G309100 Sobic001G309100 Sobic009G140700--Sobic001G309100 Sobic004G119000 Sobic004G119000 Sobic004G150400--Sobic004G119000 Sobic010G055500 Sobic010G055500 Sobic004G150400--Sobic010G055500 Sobic004G150400--Sobic007G205800 Sobic002G272800 Sobic002G272800 Sobic004G150400--Sobic002G272800 Sobic010G071200 Sobic010G071200 Sobic004G150400--Sobic010G071200 Sobic001G028400 Sobic001G028400 Sobic004G150400--Sobic001G028400 Sobic006G088100 Sobic006G088100 Sobic004G150400--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic004G150400--Sobic003G093600 Sobic006G109300 Sobic006G109300 Sobic004G150400--Sobic006G109300 Sobic004G059000 Sobic004G059000 Sobic004G305600--Sobic004G059000 Sobic003G405700 Sobic003G405700 Sobic004G305600--Sobic003G405700 Sobic003G250500 Sobic003G250500 Sobic004G305600--Sobic003G250500 Sobic002G256300 Sobic002G256300 Sobic004G305600--Sobic002G256300 Sobic003G127400 Sobic003G127400 Sobic004G305600--Sobic003G127400 Sobic004G305600--Sobic005G000800 Sobic009G246950 Sobic009G246950 Sobic004G305600--Sobic009G246950 Sobic001G512900 Sobic001G512900 Sobic004G305600--Sobic001G512900 Sobic004G253000 Sobic004G253000 Sobic004G305600--Sobic004G253000 Sobic009G114800--Sobic007G079700 Sobic001G291100 Sobic001G291100 Sobic009G114800--Sobic001G291100 Sobic009G114800--Sobic004G253000 Sobic009G114800--Sobic003G250500 Sobic009G157200 Sobic009G157200 Sobic009G114800--Sobic009G157200 Sobic009G114800--Sobic006G038400 Sobic004G301900 Sobic004G301900 Sobic009G114800--Sobic004G301900 Sobic003G116700 Sobic003G116700 Sobic009G114800--Sobic003G116700 Sobic009G114800--Sobic004G119000 Sobic006G273200 Sobic006G273200 Sobic008G062000--Sobic006G273200 Sobic004G205600 Sobic004G205600 Sobic008G062000--Sobic004G205600 Sobic008G062000--Sobic001G131800 Sobic008G062000--Sobic003G250500 Sobic010G033400 Sobic010G033400 Sobic008G062000--Sobic010G033400 Sobic008G067600 Sobic008G067600 Sobic008G062000--Sobic008G067600 Sobic008G174300 Sobic008G174300 Sobic008G062000--Sobic008G174300 Sobic008G062000--Sobic007G205800 Sobic007G132400 Sobic007G132400 Sobic008G062000--Sobic007G132400 Sobic007G079700--Sobic009G114800 Sobic006G054500 Sobic006G054500 Sobic007G079700--Sobic006G054500 Sobic006G262900 Sobic006G262900 Sobic007G079700--Sobic006G262900 Sobic002G273900 Sobic002G273900 Sobic007G079700--Sobic002G273900 Sobic009G199700 Sobic009G199700 Sobic007G079700--Sobic009G199700 Sobic007G079700--Sobic003G116700 Sobic007G079700--Sobic004G301900 Sobic007G079700--Sobic004G253000 Sobic004G272300 Sobic004G272300 Sobic007G079700--Sobic004G272300 Sobic003G350600 Sobic003G350600 Sobic001G512600--Sobic003G350600 Sobic001G512600--Sobic001G467000 Sobic008G142700 Sobic008G142700 Sobic001G512600--Sobic008G142700 Sobic001G512600--Sobic003G250500 Sobic001G512600--Sobic004G150400 Sobic003G226500 Sobic003G226500 Sobic001G512600--Sobic003G226500 Sobic001G512600--Sobic004G301900 Sobic003G000800 Sobic003G000800 Sobic001G512600--Sobic003G000800 Sobic001G372000 Sobic001G372000 Sobic001G512600--Sobic001G372000
Octagon: transcription factors


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