Gene annotation
Transcriptome id Sobic.003G356200.1
Synonym BLH9, PNY, BLR, Sb03g039840, VAN, HB-6, LSN, RPL
Functional annotation homeodomain protein, putative, expressed
UniProt C5XPT0
Pfam PF07526 PF05920
Panther DB PTHR11850:SF91 PTHR11850
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G02030 : POX (plant homeobox) family protein
RAP-DB (Rice) LOC_Os01g62920.1 : homeodomain protein, putative, expressed
MaizeGDB (Corn) Zm00025a026855 , Zm00025a043881 , Zm00025a037189
Brachypodium KQK10570 , PNT73195 , KQK05949 , KQK05948
Barley HORVU1Hr1G072850.4 , HORVU1Hr1G072850.1 , HORVU1Hr1G072850.3 , HORVU1Hr1G072850.2 , HORVU3Hr1G085720.7 , HORVU3Hr1G085720.6 , HORVU3Hr1G085720.5 , HORVU3Hr1G085720.3 , HORVU3Hr1G085720.1 , HORVU3Hr1G085720.8 , HORVU3Hr1G072010.1
Wheat TraesCS1D02G280300 , TraesCS1B02G290200 , TraesCS3D02G357400 , TraesCS3A02G363900 , TraesCS3B02G396100
Populus -


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cDNA sequences
Sobic.003G356200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
2 Sobic.001G350501 - K11253: histone H3
3 Sobic.002G348000 STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
4 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
5 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -
6 Sobic.003G380500 expressed protein -
7 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
8 Sobic.006G109300 protein binding protein, putative, expressed -
9 Sobic.004G229100 OsFBX61 - F-box domain containing protein, expressed -
10 Sobic.006G134100 carbonyl reductase 3, putative, expressed -
11 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
12 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
13 Sobic.007G130300 ES43 protein, putative, expressed -
14 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.002G272800 mediator of RNA polymerase II transcription subunit 10, putative, expressed K15151: MED10, mediator of RNA polymerase II transcription subunit 10
16 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
17 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
18 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
19 Sobic.001G216600 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.008G136000 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8


Gene co-expression network
sample Sobic003G356200 Sobic003G356200 Sobic009G164900 Sobic009G164900 Sobic003G356200--Sobic009G164900 Sobic001G350501 Sobic001G350501 Sobic003G356200--Sobic001G350501 Sobic002G348000 Sobic002G348000 Sobic003G356200--Sobic002G348000 Sobic007G063200 Sobic007G063200 Sobic003G356200--Sobic007G063200 Sobic003G026300 Sobic003G026300 Sobic003G356200--Sobic003G026300 Sobic003G380500 Sobic003G380500 Sobic003G356200--Sobic003G380500 Sobic003G346000 Sobic003G346000 Sobic003G356200--Sobic003G346000 Sobic006G109300 Sobic006G109300 Sobic003G356200--Sobic006G109300 Sobic004G229100 Sobic004G229100 Sobic003G356200--Sobic004G229100 Sobic002G007200 Sobic002G007200 Sobic009G164900--Sobic002G007200 Sobic009G164900--Sobic003G380500 Sobic001G216600 Sobic001G216600 Sobic009G164900--Sobic001G216600 Sobic009G164900--Sobic003G356200 Sobic001G217100 Sobic001G217100 Sobic009G164900--Sobic001G217100 Sobic009G164900--Sobic004G229100 Sobic009G011500 Sobic009G011500 Sobic009G164900--Sobic009G011500 Sobic007G195400 Sobic007G195400 Sobic009G164900--Sobic007G195400 Sobic002G157200 Sobic002G157200 Sobic009G164900--Sobic002G157200 Sobic003G024800 Sobic003G024800 Sobic001G350501--Sobic003G024800 Sobic004G349100 Sobic004G349100 Sobic001G350501--Sobic004G349100 Sobic001G309100 Sobic001G309100 Sobic001G350501--Sobic001G309100 Sobic010G193800 Sobic010G193800 Sobic001G350501--Sobic010G193800 Sobic008G142700 Sobic008G142700 Sobic001G350501--Sobic008G142700 Sobic009G034400 Sobic009G034400 Sobic001G350501--Sobic009G034400 Sobic003G420700 Sobic003G420700 Sobic001G350501--Sobic003G420700 Sobic009G036900 Sobic009G036900 Sobic001G350501--Sobic009G036900 Sobic001G350501--Sobic007G063200 Sobic002G348000--Sobic003G356200 Sobic002G272600 Sobic002G272600 Sobic002G348000--Sobic002G272600 Sobic002G348000--Sobic004G349100 Sobic002G348000--Sobic001G350501 Sobic002G348000--Sobic009G164900 Sobic010G224900 Sobic010G224900 Sobic002G348000--Sobic010G224900 Sobic002G348000--Sobic003G024800 Sobic002G348000--Sobic008G142700 Sobic001G427800 Sobic001G427800 Sobic002G348000--Sobic001G427800 Sobic004G263900 Sobic004G263900 Sobic007G063200--Sobic004G263900 Sobic001G028400 Sobic001G028400 Sobic007G063200--Sobic001G028400 Sobic003G359300 Sobic003G359300 Sobic007G063200--Sobic003G359300 Sobic010G033400 Sobic010G033400 Sobic007G063200--Sobic010G033400 Sobic010G071200 Sobic010G071200 Sobic007G063200--Sobic010G071200 Sobic007G063200--Sobic003G026300 Sobic010G055500 Sobic010G055500 Sobic007G063200--Sobic010G055500 Sobic006G257900 Sobic006G257900 Sobic007G063200--Sobic006G257900 Sobic007G063200--Sobic008G142700 Sobic007G008800 Sobic007G008800 Sobic003G026300--Sobic007G008800 Sobic004G188300 Sobic004G188300 Sobic003G026300--Sobic004G188300 Sobic004G088400 Sobic004G088400 Sobic003G026300--Sobic004G088400 Sobic005G167300 Sobic005G167300 Sobic003G026300--Sobic005G167300 Sobic003G026300--Sobic007G063200 Sobic001G451000 Sobic001G451000 Sobic003G026300--Sobic001G451000 Sobic005G139800 Sobic005G139800 Sobic003G026300--Sobic005G139800 Sobic002G115801 Sobic002G115801 Sobic003G026300--Sobic002G115801 Sobic005G162600 Sobic005G162600 Sobic003G026300--Sobic005G162600 Sobic006G262600 Sobic006G262600 Sobic003G380500--Sobic006G262600 Sobic003G380500--Sobic002G007200 Sobic001G179000 Sobic001G179000 Sobic003G380500--Sobic001G179000 Sobic002G221700 Sobic002G221700 Sobic003G380500--Sobic002G221700 Sobic007G191100 Sobic007G191100 Sobic003G380500--Sobic007G191100 Sobic003G380500--Sobic009G164900 Sobic004G250700 Sobic004G250700 Sobic003G380500--Sobic004G250700 Sobic003G380500--Sobic007G195400 Sobic003G380500--Sobic007G008800 Sobic002G049000 Sobic002G049000 Sobic003G346000--Sobic002G049000 Sobic007G011400 Sobic007G011400 Sobic003G346000--Sobic007G011400 Sobic008G034600 Sobic008G034600 Sobic003G346000--Sobic008G034600 Sobic002G313300 Sobic002G313300 Sobic003G346000--Sobic002G313300 Sobic002G151600 Sobic002G151600 Sobic003G346000--Sobic002G151600 Sobic003G346000--Sobic004G088400 Sobic003G346000--Sobic007G008800 Sobic002G177400 Sobic002G177400 Sobic003G346000--Sobic002G177400 Sobic004G005400 Sobic004G005400 Sobic003G346000--Sobic004G005400 Sobic006G109300--Sobic010G055500 Sobic006G109300--Sobic010G071200 Sobic004G150400 Sobic004G150400 Sobic006G109300--Sobic004G150400 Sobic006G109300--Sobic010G033400 Sobic002G365100 Sobic002G365100 Sobic006G109300--Sobic002G365100 Sobic006G109300--Sobic008G142700 Sobic001G131800 Sobic001G131800 Sobic006G109300--Sobic001G131800 Sobic006G109300--Sobic007G063200 Sobic002G272800 Sobic002G272800 Sobic006G109300--Sobic002G272800 Sobic004G229100--Sobic001G217100 Sobic004G078100 Sobic004G078100 Sobic004G229100--Sobic004G078100 Sobic009G192500 Sobic009G192500 Sobic004G229100--Sobic009G192500 Sobic003G132700 Sobic003G132700 Sobic004G229100--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic004G229100--Sobic007G046900 Sobic004G229100--Sobic009G164900 Sobic002G089900 Sobic002G089900 Sobic004G229100--Sobic002G089900 Sobic009G018000 Sobic009G018000 Sobic004G229100--Sobic009G018000 Sobic002G095700 Sobic002G095700 Sobic004G229100--Sobic002G095700
Octagon: transcription factors


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