Gene annotation
Transcriptome id Sobic.006G245300.1
Synonym Sb06g031100, IAA33
Functional annotation expressed protein
UniProt C5Y9G5
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G57420 : indole-3-acetic acid inducible 33
RAP-DB (Rice) LOC_Os04g55950.1 : expressed protein
MaizeGDB (Corn) Zm00025a057241
Brachypodium -
Barley -
Wheat TraesCS2A02G506100 , TraesCS2D02G506900 , TraesCS2B02G534500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G046500 deoxyhypusine synthase, putative, expressed K00809: DHPS, deoxyhypusine synthase
2 Sobic.004G220300 "Phenylalanine ammonia-lyase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phenylalanine ammonia-lyase, putative, expressed K13064: phenylalanine/tyrosine ammonia-lyase
3 Sobic.009G175200 expressed protein -
4 Sobic.003G020300 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.003G375000 RNA recognition motif containing protein, putative, expressed -
6 Sobic.006G139300 plant protein of unknown function DUF869 domain containing protein, expressed -
7 Sobic.008G086200 expressed protein -
8 Sobic.005G088500 integral membrane protein DUF6 containing protein, expressed -
9 Sobic.003G183800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.010G123500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
11 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
12 Sobic.009G162500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase
13 Sobic.003G420201 - -
14 Sobic.004G205500 expressed protein -
15 Sobic.007G033300 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.006G269600 zinc finger, RING-type, putative, expressed -
17 Sobic.004G225700 F-box/LRR-repeat protein 2, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
18 Sobic.008G114600 - -
19 Sobic.004G066100 OsFBX85 - F-box domain containing protein, expressed -
20 Sobic.005G169700 targeting protein for Xklp2, putative, expressed -


Gene co-expression network
sample Sobic006G245300 Sobic006G245300 Sobic006G046500 Sobic006G046500 Sobic006G245300--Sobic006G046500 Sobic004G220300 Sobic004G220300 Sobic006G245300--Sobic004G220300 Sobic009G175200 Sobic009G175200 Sobic006G245300--Sobic009G175200 Sobic003G020300 Sobic003G020300 Sobic006G245300--Sobic003G020300 Sobic003G375000 Sobic003G375000 Sobic006G245300--Sobic003G375000 Sobic006G139300 Sobic006G139300 Sobic006G245300--Sobic006G139300 Sobic008G086200 Sobic008G086200 Sobic006G245300--Sobic008G086200 Sobic005G088500 Sobic005G088500 Sobic006G245300--Sobic005G088500 Sobic003G183800 Sobic003G183800 Sobic006G245300--Sobic003G183800 Sobic006G046500--Sobic005G088500 Sobic006G046500--Sobic003G020300 Sobic005G135700 Sobic005G135700 Sobic006G046500--Sobic005G135700 Sobic009G109850 Sobic009G109850 Sobic006G046500--Sobic009G109850 Sobic010G108200 Sobic010G108200 Sobic006G046500--Sobic010G108200 Sobic002G394700 Sobic002G394700 Sobic006G046500--Sobic002G394700 Sobic006G046500--Sobic006G245300 Sobic001G147650 Sobic001G147650 Sobic006G046500--Sobic001G147650 Sobic003G071300 Sobic003G071300 Sobic006G046500--Sobic003G071300 Sobic006G213100 Sobic006G213100 Sobic004G220300--Sobic006G213100 Sobic004G220300--Sobic006G245300 Sobic003G328800 Sobic003G328800 Sobic004G220300--Sobic003G328800 Sobic003G397300 Sobic003G397300 Sobic004G220300--Sobic003G397300 Sobic009G162500 Sobic009G162500 Sobic004G220300--Sobic009G162500 Sobic001G516500 Sobic001G516500 Sobic004G220300--Sobic001G516500 Sobic009G026200 Sobic009G026200 Sobic004G220300--Sobic009G026200 Sobic001G471900 Sobic001G471900 Sobic004G220300--Sobic001G471900 Sobic008G174800 Sobic008G174800 Sobic004G220300--Sobic008G174800 Sobic009G175200--Sobic008G086200 Sobic003G174900 Sobic003G174900 Sobic009G175200--Sobic003G174900 Sobic009G099700 Sobic009G099700 Sobic009G175200--Sobic009G099700 Sobic001G361800 Sobic001G361800 Sobic009G175200--Sobic001G361800 Sobic004G247300 Sobic004G247300 Sobic009G175200--Sobic004G247300 Sobic007G210900 Sobic007G210900 Sobic009G175200--Sobic007G210900 Sobic004G154600 Sobic004G154600 Sobic009G175200--Sobic004G154600 Sobic009G175200--Sobic003G375000 Sobic004G225700 Sobic004G225700 Sobic009G175200--Sobic004G225700 Sobic003G020300--Sobic006G139300 Sobic008G114600 Sobic008G114600 Sobic003G020300--Sobic008G114600 Sobic003G020300--Sobic006G046500 Sobic003G020300--Sobic005G088500 Sobic003G420201 Sobic003G420201 Sobic003G020300--Sobic003G420201 Sobic004G066100 Sobic004G066100 Sobic003G020300--Sobic004G066100 Sobic007G033300 Sobic007G033300 Sobic003G020300--Sobic007G033300 Sobic003G020300--Sobic005G135700 Sobic003G020300--Sobic006G245300 Sobic003G375000--Sobic008G086200 Sobic003G375000--Sobic003G174900 Sobic003G375000--Sobic009G175200 Sobic007G187400 Sobic007G187400 Sobic003G375000--Sobic007G187400 Sobic001G494100 Sobic001G494100 Sobic003G375000--Sobic001G494100 Sobic006G248300 Sobic006G248300 Sobic003G375000--Sobic006G248300 Sobic003G375000--Sobic004G225700 Sobic003G277900 Sobic003G277900 Sobic003G375000--Sobic003G277900 Sobic005G204100 Sobic005G204100 Sobic003G375000--Sobic005G204100 Sobic006G139300--Sobic003G020300 Sobic006G139300--Sobic003G420201 Sobic006G139300--Sobic006G046500 Sobic006G139300--Sobic005G088500 Sobic006G139300--Sobic008G114600 Sobic006G139300--Sobic007G033300 Sobic006G139300--Sobic005G135700 Sobic009G056400 Sobic009G056400 Sobic006G139300--Sobic009G056400 Sobic006G139300--Sobic004G066100 Sobic008G086200--Sobic004G225700 Sobic008G086200--Sobic009G175200 Sobic008G086200--Sobic003G174900 Sobic008G086200--Sobic003G375000 Sobic009G123500 Sobic009G123500 Sobic008G086200--Sobic009G123500 Sobic008G190500 Sobic008G190500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700 Sobic002G039400 Sobic002G039400 Sobic005G088500--Sobic002G039400 Sobic005G088500--Sobic005G135700 Sobic005G088500--Sobic002G394700 Sobic005G088500--Sobic006G046500 Sobic005G088500--Sobic010G108200 Sobic005G088500--Sobic009G109850 Sobic001G510200 Sobic001G510200 Sobic005G088500--Sobic001G510200 Sobic006G125600 Sobic006G125600 Sobic005G088500--Sobic006G125600 Sobic005G088500--Sobic003G071300 Sobic008G145300 Sobic008G145300 Sobic003G183800--Sobic008G145300 Sobic001G441700 Sobic001G441700 Sobic003G183800--Sobic001G441700 Sobic005G146300 Sobic005G146300 Sobic003G183800--Sobic005G146300 Sobic003G183800--Sobic007G033300 Sobic003G183800--Sobic002G039400 Sobic005G169700 Sobic005G169700 Sobic003G183800--Sobic005G169700 Sobic004G341300 Sobic004G341300 Sobic003G183800--Sobic004G341300 Sobic003G183800--Sobic005G088500 Sobic003G183800--Sobic006G245300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.