Gene annotation
Transcriptome id Sobic.010G123500.3,Sobic.010G123500.1,Sobic.010G123500.2,Sobic.010G123500.4
Synonym B-box (BBX) protein, Sb10g010860, COL9, SbBBX21, SbBBX21;B-box (BBX) protein
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCT/B-box zinc finger protein, putative, expressed
UniProt A0A1W0VSK9 , A0A194YJQ9 , C5Z916 , A0A1W0VSK8
Pfam PF00643 PF00643 PF06203
Panther DB PTHR31717 PTHR31717:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0008270zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G48250 : B-box type zinc finger protein with CCT domain,CONSTANS-like 9
RAP-DB (Rice) LOC_Os06g19444.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a050526 , Zm00025a021865
Brachypodium KQK01529 , KQK18548 , KQK01530
Barley -
Wheat TraesCS7D02G220300 , TraesCS7D02G220300 , TraesCS7B02G125500
Populus -


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cDNA sequences
Sobic.010G123500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G169501 - -
2 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
3 Sobic.001G267233 - -
4 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
5 Sobic.008G091900 - -
6 Sobic.002G177400 expressed protein -
7 Sobic.004G289500 - -
8 Sobic.005G117801 - -
9 Sobic.001G253100 3-5 exonuclease family protein, putative, expressed -
10 Sobic.007G121400 YDG/SRA domain containing protein, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
11 Sobic.003G380500 expressed protein -
12 Sobic.004G286900 - -
13 Sobic.005G110430 - -
14 Sobic.002G090400 polygalacturonase, putative, expressed -
15 Sobic.007G115000 - -
16 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
17 Sobic.010G208500 - -
18 Sobic.004G088400 GTPase-activating protein, putative, expressed -
19 Sobic.001G116100 threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed K01754: E4.3.1.19, ilvA, threonine dehydratase
20 Sobic.007G099500 hypothetical protein -


Gene co-expression network
sample Sobic010G123500 Sobic010G123500 Sobic004G169501 Sobic004G169501 Sobic010G123500--Sobic004G169501 Sobic003G128600 Sobic003G128600 Sobic010G123500--Sobic003G128600 Sobic001G267233 Sobic001G267233 Sobic010G123500--Sobic001G267233 Sobic002G221700 Sobic002G221700 Sobic010G123500--Sobic002G221700 Sobic008G091900 Sobic008G091900 Sobic010G123500--Sobic008G091900 Sobic002G177400 Sobic002G177400 Sobic010G123500--Sobic002G177400 Sobic004G289500 Sobic004G289500 Sobic010G123500--Sobic004G289500 Sobic005G117801 Sobic005G117801 Sobic010G123500--Sobic005G117801 Sobic001G253100 Sobic001G253100 Sobic010G123500--Sobic001G253100 Sobic003G315332 Sobic003G315332 Sobic004G169501--Sobic003G315332 Sobic007G142050 Sobic007G142050 Sobic004G169501--Sobic007G142050 Sobic008G068800 Sobic008G068800 Sobic004G169501--Sobic008G068800 Sobic007G116400 Sobic007G116400 Sobic004G169501--Sobic007G116400 Sobic008G117200 Sobic008G117200 Sobic004G169501--Sobic008G117200 Sobic003G204000 Sobic003G204000 Sobic004G169501--Sobic003G204000 Sobic004G169501--Sobic001G267233 Sobic002G181450 Sobic002G181450 Sobic004G169501--Sobic002G181450 Sobic007G089600 Sobic007G089600 Sobic004G169501--Sobic007G089600 Sobic009G059600 Sobic009G059600 Sobic003G128600--Sobic009G059600 Sobic003G128600--Sobic004G169501 Sobic003G015000 Sobic003G015000 Sobic003G128600--Sobic003G015000 Sobic002G140800 Sobic002G140800 Sobic003G128600--Sobic002G140800 Sobic004G286900 Sobic004G286900 Sobic003G128600--Sobic004G286900 Sobic009G257300 Sobic009G257300 Sobic003G128600--Sobic009G257300 Sobic004G164600 Sobic004G164600 Sobic003G128600--Sobic004G164600 Sobic003G128600--Sobic008G068800 Sobic003G128600--Sobic008G117200 Sobic001G267233--Sobic005G117801 Sobic005G110427 Sobic005G110427 Sobic001G267233--Sobic005G110427 Sobic005G110430 Sobic005G110430 Sobic001G267233--Sobic005G110430 Sobic001G267233--Sobic001G253100 Sobic001G267233--Sobic008G091900 Sobic002G056100 Sobic002G056100 Sobic001G267233--Sobic002G056100 Sobic008G042250 Sobic008G042250 Sobic001G267233--Sobic008G042250 Sobic008G049701 Sobic008G049701 Sobic001G267233--Sobic008G049701 Sobic001G240400 Sobic001G240400 Sobic001G267233--Sobic001G240400 Sobic002G221700--Sobic004G164600 Sobic002G221700--Sobic008G042250 Sobic002G221700--Sobic001G253100 Sobic002G221700--Sobic005G110430 Sobic004G076732 Sobic004G076732 Sobic002G221700--Sobic004G076732 Sobic008G009500 Sobic008G009500 Sobic002G221700--Sobic008G009500 Sobic007G073400 Sobic007G073400 Sobic002G221700--Sobic007G073400 Sobic008G157950 Sobic008G157950 Sobic002G221700--Sobic008G157950 Sobic004G212800 Sobic004G212800 Sobic002G221700--Sobic004G212800 Sobic008G091900--Sobic005G117801 Sobic002G221200 Sobic002G221200 Sobic008G091900--Sobic002G221200 Sobic008G091900--Sobic001G253100 Sobic001G305400 Sobic001G305400 Sobic008G091900--Sobic001G305400 Sobic003G031750 Sobic003G031750 Sobic008G091900--Sobic003G031750 Sobic008G091900--Sobic001G240400 Sobic002G062300 Sobic002G062300 Sobic008G091900--Sobic002G062300 Sobic008G091900--Sobic005G110430 Sobic005G212600 Sobic005G212600 Sobic008G091900--Sobic005G212600 Sobic004G088400 Sobic004G088400 Sobic002G177400--Sobic004G088400 Sobic009G030300 Sobic009G030300 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic007G008800 Sobic007G008800 Sobic002G177400--Sobic007G008800 Sobic008G129700 Sobic008G129700 Sobic002G177400--Sobic008G129700 Sobic002G177400--Sobic007G116400 Sobic003G346000 Sobic003G346000 Sobic002G177400--Sobic003G346000 Sobic004G061900 Sobic004G061900 Sobic002G177400--Sobic004G061900 Sobic002G177400--Sobic008G068800 Sobic006G269600 Sobic006G269600 Sobic004G289500--Sobic006G269600 Sobic002G073300 Sobic002G073300 Sobic004G289500--Sobic002G073300 Sobic004G289500--Sobic002G140800 Sobic010G139301 Sobic010G139301 Sobic004G289500--Sobic010G139301 Sobic004G289500--Sobic004G286900 Sobic006G063300 Sobic006G063300 Sobic004G289500--Sobic006G063300 Sobic004G193800 Sobic004G193800 Sobic004G289500--Sobic004G193800 Sobic002G050500 Sobic002G050500 Sobic004G289500--Sobic002G050500 Sobic008G086200 Sobic008G086200 Sobic004G289500--Sobic008G086200 Sobic005G117801--Sobic001G253100 Sobic005G117801--Sobic008G091900 Sobic009G209800 Sobic009G209800 Sobic005G117801--Sobic009G209800 Sobic005G117801--Sobic001G240400 Sobic005G117801--Sobic002G221200 Sobic005G117801--Sobic008G049701 Sobic005G117801--Sobic005G110430 Sobic005G117801--Sobic008G042250 SobicK009900 SobicK009900 Sobic005G117801--SobicK009900 Sobic001G253100--Sobic005G117801 Sobic001G253100--Sobic009G209800 Sobic001G253100--Sobic005G110430 Sobic001G253100--Sobic008G042250 Sobic001G253100--Sobic004G076732 Sobic001G253100--Sobic001G240400 Sobic001G253100--Sobic008G091900 Sobic001G253100--Sobic008G049701 Sobic001G253100--SobicK009900
Octagon: transcription factors


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