Gene annotation
Transcriptome id Sobic.001G483800.2,Sobic.001G483800.3,Sobic.001G483800.1,Sobic.001G483800.5,Sobic.001G483800.4
Synonym Sb01g045280
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tubulin--tyrosine ligase-like protein 12, putative, expressed
UniProt A0A1B6QQ61 , A0A1Z5SB41 , A0A1Z5SB35 , C5WVS3
Pfam PF03133
Panther DB PTHR12241:SF13 PTHR12241 PTHR12241 PTHR12241:SF13
NCBI CDD -
KEGG Orthology K16609; tubulin--tyrosine ligase-like protein 12
Gene Ontology GO:0006464; cellular protein modification process


Orthologs (automatic annotation)
TAIR AT1G77550 : tubulin-tyrosine ligases;tubulin-tyrosine ligases
RAP-DB (Rice) LOC_Os03g08140.2,LOC_Os03g08140.1 : tubulin--tyrosine ligase-like protein 12, putative, expressed
MaizeGDB (Corn) Zm00025a053301
Brachypodium KQK23336
Barley -
Wheat TraesCS4D02G292900 , TraesCS4D02G292900 , TraesCS4D02G292900 , TraesCS4A02G010300 , TraesCS4A02G010300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
2 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
3 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
4 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
5 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
6 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
7 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
8 Sobic.005G088900 AGAP007117-PA, putative, expressed -
9 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
10 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
11 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
12 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
13 Sobic.005G079201 - -
14 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
15 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
17 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
18 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.005G098800 CIP111, putative, expressed K14575: AFG2, DRG1, AAA family ATPase
20 Sobic.008G090000 oxysterol-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G483800 Sobic001G483800 Sobic001G372800 Sobic001G372800 Sobic001G483800--Sobic001G372800 Sobic009G191500 Sobic009G191500 Sobic001G483800--Sobic009G191500 Sobic008G068100 Sobic008G068100 Sobic001G483800--Sobic008G068100 Sobic002G268100 Sobic002G268100 Sobic001G483800--Sobic002G268100 Sobic009G010300 Sobic009G010300 Sobic001G483800--Sobic009G010300 Sobic003G336500 Sobic003G336500 Sobic001G483800--Sobic003G336500 Sobic005G028100 Sobic005G028100 Sobic001G483800--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic001G483800--Sobic005G088900 Sobic003G322200 Sobic003G322200 Sobic001G483800--Sobic003G322200 Sobic001G372800--Sobic001G483800 Sobic001G372800--Sobic002G268100 Sobic001G372800--Sobic003G322200 Sobic001G372800--Sobic009G010300 Sobic001G372800--Sobic009G191500 Sobic001G401400 Sobic001G401400 Sobic001G372800--Sobic001G401400 Sobic010G038800 Sobic010G038800 Sobic001G372800--Sobic010G038800 Sobic001G372800--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic001G372800--Sobic003G432300 Sobic009G191500--Sobic008G068100 Sobic004G215900 Sobic004G215900 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000 Sobic002G268100--Sobic009G010300 Sobic002G268100--Sobic001G372800 Sobic002G268100--Sobic001G483800 Sobic004G082700 Sobic004G082700 Sobic002G268100--Sobic004G082700 Sobic002G268100--Sobic010G038800 Sobic002G268100--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic002G268100--Sobic003G123200 Sobic010G252700 Sobic010G252700 Sobic002G268100--Sobic010G252700 Sobic002G362200 Sobic002G362200 Sobic002G268100--Sobic002G362200 Sobic009G010300--Sobic002G268100 Sobic009G010300--Sobic001G483800 Sobic009G010300--Sobic001G372800 Sobic009G010300--Sobic008G068100 Sobic009G010300--Sobic003G123200 Sobic001G408300 Sobic001G408300 Sobic009G010300--Sobic001G408300 Sobic010G065800 Sobic010G065800 Sobic009G010300--Sobic010G065800 Sobic008G090000 Sobic008G090000 Sobic009G010300--Sobic008G090000 Sobic009G010300--Sobic009G191500 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic005G088900--Sobic009G176300 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic005G088900--Sobic002G003300 Sobic003G322200--Sobic001G372800 Sobic003G322200--Sobic001G401400 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic003G322200--Sobic001G483800
Octagon: transcription factors


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