Gene annotation
Transcriptome id Sobic.003G412000.1
Synonym Sb03g044640
Functional annotation tRNA methyltransferase, putative, expressed
UniProt A0A1B6Q803
Pfam PF04189
Panther DB PTHR12945
NCBI CDD KOG1416; tRNA(1-methyladenosine) methyltransferase, subunit GCD10
KEGG Orthology K03256; TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45730 : eukaryotic initiation factor 3 gamma subunit family protein
RAP-DB (Rice) LOC_Os04g02150.2 : tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a026190 , Zm00025a039224
Brachypodium KQJ81630
Barley HORVU3Hr1G006170.9 , HORVU3Hr1G006170.8 , HORVU3Hr1G006170.7 , HORVU3Hr1G006170.6 , HORVU3Hr1G006170.5 , HORVU3Hr1G006170.4 , HORVU3Hr1G006170.3 , HORVU3Hr1G006170.2 , HORVU3Hr1G006170.1 , HORVU3Hr1G006170.28 , HORVU3Hr1G006170.29 , HORVU3Hr1G006170.26 , HORVU3Hr1G006170.27 , HORVU3Hr1G006170.25 , HORVU3Hr1G006170.22 , HORVU3Hr1G006170.20 , HORVU3Hr1G006170.21 , HORVU3Hr1G006170.43 , HORVU3Hr1G006170.44 , HORVU3Hr1G006170.23 , HORVU3Hr1G006170.17 , HORVU3Hr1G006170.15 , HORVU3Hr1G006170.14 , HORVU3Hr1G006170.13 , HORVU3Hr1G006170.12 , HORVU3Hr1G006170.11 , HORVU3Hr1G006170.10 , HORVU3Hr1G006170.19 , HORVU3Hr1G006170.18 , HORVU3Hr1G006170.38 , HORVU3Hr1G006170.39 , HORVU3Hr1G006170.40 , HORVU3Hr1G006170.41 , HORVU3Hr1G006170.31 , HORVU3Hr1G006170.30 , HORVU3Hr1G006170.32 , HORVU3Hr1G006170.35 , HORVU3Hr1G006170.42 , HORVU3Hr1G006170.37 , HORVU3Hr1G006170.36
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
2 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
3 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
4 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
5 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
6 Sobic.002G112600 zinc finger family protein, putative, expressed -
7 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
8 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
9 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
10 Sobic.006G069100 pentatricopeptide, putative, expressed -
11 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
12 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
13 Sobic.003G144000 pentatricopeptide, putative, expressed -
14 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
15 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
16 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
17 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
18 Sobic.003G325900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat, putative, expressed -
19 Sobic.001G049800 DDT domain containing protein, putative, expressed -
20 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -


Gene co-expression network
sample Sobic003G412000 Sobic003G412000 Sobic001G024000 Sobic001G024000 Sobic003G412000--Sobic001G024000 Sobic003G322200 Sobic003G322200 Sobic003G412000--Sobic003G322200 Sobic005G098000 Sobic005G098000 Sobic003G412000--Sobic005G098000 Sobic008G068100 Sobic008G068100 Sobic003G412000--Sobic008G068100 Sobic008G111600 Sobic008G111600 Sobic003G412000--Sobic008G111600 Sobic002G112600 Sobic002G112600 Sobic003G412000--Sobic002G112600 Sobic010G038800 Sobic010G038800 Sobic003G412000--Sobic010G038800 Sobic001G483800 Sobic001G483800 Sobic003G412000--Sobic001G483800 Sobic009G154900 Sobic009G154900 Sobic003G412000--Sobic009G154900 Sobic004G215900 Sobic004G215900 Sobic001G024000--Sobic004G215900 Sobic010G205900 Sobic010G205900 Sobic001G024000--Sobic010G205900 Sobic001G024000--Sobic008G111600 Sobic009G246500 Sobic009G246500 Sobic001G024000--Sobic009G246500 Sobic001G024000--Sobic008G068100 Sobic001G024000--Sobic003G412000 Sobic008G049100 Sobic008G049100 Sobic001G024000--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic001G024000--Sobic003G123200 Sobic002G003300 Sobic002G003300 Sobic001G024000--Sobic002G003300 Sobic001G372800 Sobic001G372800 Sobic003G322200--Sobic001G372800 Sobic001G401400 Sobic001G401400 Sobic003G322200--Sobic001G401400 Sobic003G322200--Sobic003G123200 Sobic003G322200--Sobic003G412000 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic003G322200--Sobic001G483800 Sobic010G161525 Sobic010G161525 Sobic005G098000--Sobic010G161525 Sobic005G098000--Sobic008G111600 Sobic003G144000 Sobic003G144000 Sobic005G098000--Sobic003G144000 Sobic006G206200 Sobic006G206200 Sobic005G098000--Sobic006G206200 Sobic005G098000--Sobic003G412000 Sobic003G432300 Sobic003G432300 Sobic005G098000--Sobic003G432300 Sobic003G130000 Sobic003G130000 Sobic005G098000--Sobic003G130000 Sobic005G088900 Sobic005G088900 Sobic005G098000--Sobic005G088900 Sobic005G098000--Sobic010G038800 Sobic009G191500 Sobic009G191500 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic002G426100 Sobic002G426100 Sobic008G111600--Sobic002G426100 Sobic006G181800 Sobic006G181800 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic002G043000 Sobic002G043000 Sobic008G111600--Sobic002G043000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic008G111600--Sobic002G003300 Sobic008G111600--Sobic003G144000 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic002G112600--Sobic004G215900 Sobic010G224700 Sobic010G224700 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic004G027400 Sobic004G027400 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic002G112600--Sobic001G453500 Sobic004G027300 Sobic004G027300 Sobic002G112600--Sobic004G027300 Sobic010G038800--Sobic004G215900 Sobic010G038800--Sobic003G144000 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic010G038800--Sobic001G372800 Sobic010G038800--Sobic003G322200 Sobic010G038800--Sobic003G123200 Sobic010G038800--Sobic008G068100 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic001G483800--Sobic008G068100 Sobic002G268100 Sobic002G268100 Sobic001G483800--Sobic002G268100 Sobic009G010300 Sobic009G010300 Sobic001G483800--Sobic009G010300 Sobic001G483800--Sobic003G336500 Sobic005G028100 Sobic005G028100 Sobic001G483800--Sobic005G028100 Sobic001G483800--Sobic005G088900 Sobic001G483800--Sobic003G322200 Sobic006G262800 Sobic006G262800 Sobic009G154900--Sobic006G262800 Sobic001G043200 Sobic001G043200 Sobic009G154900--Sobic001G043200 Sobic003G194800 Sobic003G194800 Sobic009G154900--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G154900--Sobic004G215600 Sobic004G007900 Sobic004G007900 Sobic009G154900--Sobic004G007900 Sobic009G108400 Sobic009G108400 Sobic009G154900--Sobic009G108400 Sobic004G194100 Sobic004G194100 Sobic009G154900--Sobic004G194100 Sobic001G448100 Sobic001G448100 Sobic009G154900--Sobic001G448100 Sobic005G123400 Sobic005G123400 Sobic009G154900--Sobic005G123400
Octagon: transcription factors


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