Gene annotation
Transcriptome id Sobic.008G068100.1,Sobic.008G068100.2
Synonym Sb08g005650
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tRNA pseudouridine synthase family protein, putative, expressed
UniProt A0A1Z5R5P5 , C5YTE9
Pfam PF01416
Panther DB PTHR11142 PTHR11142:SF1
NCBI CDD KOG4393; Predicted pseudouridylate synthase
KEGG Orthology K06173; truA, tRNA pseudouridine38-40 synthase
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT1G09800 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os12g09290.1 : tRNA pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a025697
Brachypodium KQJ91916
Barley HORVU5Hr1G029010.15 , HORVU5Hr1G029010.14 , HORVU5Hr1G029010.17 , HORVU5Hr1G029010.16 , HORVU5Hr1G029010.11 , HORVU5Hr1G029010.10 , HORVU5Hr1G029010.13 , HORVU5Hr1G029010.19 , HORVU5Hr1G029010.18 , HORVU5Hr1G029010.1 , HORVU5Hr1G029010.3 , HORVU5Hr1G029010.2 , HORVU5Hr1G029010.5 , HORVU5Hr1G029010.4 , HORVU5Hr1G029010.7 , HORVU5Hr1G029010.6 , HORVU5Hr1G029010.9 , HORVU5Hr1G029010.8 , HORVU5Hr1G029010.12 , HORVU5Hr1G028980.1 , HORVU5Hr1G028980.2 , HORVU5Hr1G029010.23 , HORVU5Hr1G029010.20 , HORVU5Hr1G029010.21 , HORVU5Hr1G029010.22 , HORVU5Hr1G029010.24
Wheat TraesCSU02G134800 , TraesCS5B02G120900 , TraesCS5A02G115900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
2 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
3 Sobic.005G079201 - -
4 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
5 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
6 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
7 Sobic.005G088900 AGAP007117-PA, putative, expressed -
8 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
9 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
10 Sobic.002G043000 HEN1, putative, expressed -
11 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
12 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
13 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
14 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
15 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
16 Sobic.001G453500 expressed protein -
17 Sobic.004G027400 - -
18 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
19 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
20 Sobic.001G049800 DDT domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G068100 Sobic008G068100 Sobic009G191500 Sobic009G191500 Sobic008G068100--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic002G003300 Sobic002G003300 Sobic008G068100--Sobic002G003300 Sobic001G483800 Sobic001G483800 Sobic008G068100--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic008G068100--Sobic005G088900 Sobic003G336500 Sobic003G336500 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic005G079201--Sobic008G068100 Sobic005G079201--Sobic009G191500 Sobic005G079201--Sobic004G215900 Sobic005G079201--Sobic006G236000 Sobic005G079201--Sobic005G088900 Sobic008G090000 Sobic008G090000 Sobic005G079201--Sobic008G090000 Sobic005G079201--Sobic002G043000 Sobic005G079201--Sobic002G003300 Sobic001G408300 Sobic001G408300 Sobic005G079201--Sobic001G408300 Sobic006G236000--Sobic004G215900 Sobic006G236000--Sobic008G068100 Sobic003G123100 Sobic003G123100 Sobic006G236000--Sobic003G123100 Sobic006G236000--Sobic002G043000 Sobic006G112700 Sobic006G112700 Sobic006G236000--Sobic006G112700 Sobic006G181800 Sobic006G181800 Sobic006G236000--Sobic006G181800 Sobic006G236000--Sobic009G191500 Sobic006G236000--Sobic002G003300 Sobic006G236000--Sobic008G111600 Sobic002G003300--Sobic004G215900 Sobic002G003300--Sobic009G191500 Sobic002G003300--Sobic008G068100 Sobic002G003300--Sobic008G111600 Sobic002G003300--Sobic005G088900 Sobic002G003300--Sobic006G236000 Sobic002G003300--Sobic002G043000 Sobic002G003300--Sobic001G024000 Sobic002G003300--Sobic006G181800 Sobic001G372800 Sobic001G372800 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic001G483800--Sobic008G068100 Sobic002G268100 Sobic002G268100 Sobic001G483800--Sobic002G268100 Sobic009G010300 Sobic009G010300 Sobic001G483800--Sobic009G010300 Sobic001G483800--Sobic003G336500 Sobic005G028100 Sobic005G028100 Sobic001G483800--Sobic005G028100 Sobic001G483800--Sobic005G088900 Sobic003G322200 Sobic003G322200 Sobic001G483800--Sobic003G322200 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic005G088900--Sobic002G003300 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic003G336500--Sobic005G088900 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic001G024000--Sobic004G215900 Sobic010G205900 Sobic010G205900 Sobic001G024000--Sobic010G205900 Sobic001G024000--Sobic008G111600 Sobic009G246500 Sobic009G246500 Sobic001G024000--Sobic009G246500 Sobic001G024000--Sobic008G068100 Sobic003G412000 Sobic003G412000 Sobic001G024000--Sobic003G412000 Sobic008G049100 Sobic008G049100 Sobic001G024000--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic001G024000--Sobic003G123200 Sobic001G024000--Sobic002G003300
Octagon: transcription factors


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