Gene annotation
Transcriptome id Sobic.009G176300.3,Sobic.009G176300.4,Sobic.009G176300.5,Sobic.009G176300.2,Sobic.009G176300.1
Synonym Sb09g023670
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5R394 , C5YZV0 , A0A1Z5R335 , A0A1Z5R3U5 , A0A1Z5R434
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF488 PTHR24015 PTHR24015:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11900 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g40320.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044031
Brachypodium KQK07531
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G088900 AGAP007117-PA, putative, expressed -
2 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
3 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
4 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
5 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
6 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
7 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
8 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
9 Sobic.004G027400 - -
10 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
11 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
12 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
13 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
14 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
15 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
16 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
17 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
18 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
19 Sobic.003G436600 expressed protein -
20 Sobic.001G049800 DDT domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G176300 Sobic009G176300 Sobic005G088900 Sobic005G088900 Sobic009G176300--Sobic005G088900 Sobic008G068100 Sobic008G068100 Sobic009G176300--Sobic008G068100 Sobic009G191500 Sobic009G191500 Sobic009G176300--Sobic009G191500 Sobic003G432300 Sobic003G432300 Sobic009G176300--Sobic003G432300 Sobic003G336500 Sobic003G336500 Sobic009G176300--Sobic003G336500 Sobic003G235700 Sobic003G235700 Sobic009G176300--Sobic003G235700 Sobic005G028100 Sobic005G028100 Sobic009G176300--Sobic005G028100 Sobic001G199500 Sobic001G199500 Sobic009G176300--Sobic001G199500 Sobic004G027400 Sobic004G027400 Sobic009G176300--Sobic004G027400 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic001G483800 Sobic001G483800 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic002G126800 Sobic002G126800 Sobic003G432300--Sobic002G126800 Sobic003G432300--Sobic005G028100 Sobic003G432300--Sobic005G088900 Sobic002G132600 Sobic002G132600 Sobic003G432300--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic003G432300--Sobic001G373000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic004G038100 Sobic004G038100 Sobic003G432300--Sobic004G038100 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic003G336500--Sobic005G088900 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic003G130000 Sobic003G130000 Sobic003G235700--Sobic003G130000 Sobic003G235700--Sobic009G176300 Sobic005G098000 Sobic005G098000 Sobic003G235700--Sobic005G098000 Sobic007G140100 Sobic007G140100 Sobic003G235700--Sobic007G140100 Sobic008G163400 Sobic008G163400 Sobic003G235700--Sobic008G163400 Sobic003G235700--Sobic003G144000 Sobic003G235700--Sobic005G088900 Sobic010G161525 Sobic010G161525 Sobic003G235700--Sobic010G161525 Sobic001G268300 Sobic001G268300 Sobic003G235700--Sobic001G268300 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic005G028100--Sobic002G126800 Sobic005G028100--Sobic001G373000 Sobic005G028100--Sobic002G132600 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic006G084300 Sobic006G084300 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic006G281900 Sobic006G281900 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic007G006800 Sobic007G006800 Sobic001G199500--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic001G199500--Sobic006G071628 Sobic001G199500--Sobic003G144000 Sobic004G027400--Sobic004G215900 Sobic001G453500 Sobic001G453500 Sobic004G027400--Sobic001G453500 Sobic002G112600 Sobic002G112600 Sobic004G027400--Sobic002G112600 Sobic004G027300 Sobic004G027300 Sobic004G027400--Sobic004G027300 Sobic004G027400--Sobic008G068100 Sobic010G224700 Sobic010G224700 Sobic004G027400--Sobic010G224700 Sobic006G140400 Sobic006G140400 Sobic004G027400--Sobic006G140400 Sobic004G027400--Sobic005G028100 Sobic007G014800 Sobic007G014800 Sobic004G027400--Sobic007G014800
Octagon: transcription factors


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