Gene annotation
Transcriptome id Sobic.002G367200.2
Synonym
Functional annotation RNA-binding protein-like, putative, expressed
UniProt A0A1W0W7B2
Pfam PF00076 PF02136
Panther DB PTHR10693 PTHR10693:SF25
NCBI CDD KOG0116; RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0006810transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT3G25150 : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
RAP-DB (Rice) LOC_Os07g41180.1 : RNA-binding protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a048690
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G028100 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
2 Sobic.003G122800 translin, putative, expressed -
3 Sobic.003G102700 exostosin family protein, putative, expressed -
4 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
5 Sobic.007G199800 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
6 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
7 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
8 Sobic.009G224300 expressed protein -
9 Sobic.007G082000 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
12 Sobic.009G060600 - -
13 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
14 Sobic.005G139300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amidase, putative, expressed -
15 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
16 Sobic.008G118100 kelch repeat protein, putative, expressed -
17 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G168000 expressed protein -
19 Sobic.005G036200 protein of unknown function containing protein, expressed -
20 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11


Gene co-expression network
sample Sobic002G367200 Sobic002G367200 Sobic009G028100 Sobic009G028100 Sobic002G367200--Sobic009G028100 Sobic003G122800 Sobic003G122800 Sobic002G367200--Sobic003G122800 Sobic003G102700 Sobic003G102700 Sobic002G367200--Sobic003G102700 Sobic002G095300 Sobic002G095300 Sobic002G367200--Sobic002G095300 Sobic007G199800 Sobic007G199800 Sobic002G367200--Sobic007G199800 Sobic007G050800 Sobic007G050800 Sobic002G367200--Sobic007G050800 Sobic005G068800 Sobic005G068800 Sobic002G367200--Sobic005G068800 Sobic009G224300 Sobic009G224300 Sobic002G367200--Sobic009G224300 Sobic007G082000 Sobic007G082000 Sobic002G367200--Sobic007G082000 Sobic009G028100--Sobic002G367200 Sobic003G147500 Sobic003G147500 Sobic009G028100--Sobic003G147500 Sobic009G012600 Sobic009G012600 Sobic009G028100--Sobic009G012600 Sobic001G460100 Sobic001G460100 Sobic009G028100--Sobic001G460100 Sobic002G238500 Sobic002G238500 Sobic009G028100--Sobic002G238500 Sobic009G028100--Sobic003G122800 Sobic009G028100--Sobic007G050800 Sobic004G291200 Sobic004G291200 Sobic009G028100--Sobic004G291200 Sobic002G158500 Sobic002G158500 Sobic009G028100--Sobic002G158500 Sobic003G122800--Sobic002G367200 Sobic008G162100 Sobic008G162100 Sobic003G122800--Sobic008G162100 Sobic003G122800--Sobic009G028100 Sobic003G129300 Sobic003G129300 Sobic003G122800--Sobic003G129300 Sobic003G122800--Sobic002G095300 Sobic003G326500 Sobic003G326500 Sobic003G122800--Sobic003G326500 Sobic003G122800--Sobic003G102700 Sobic003G119900 Sobic003G119900 Sobic003G122800--Sobic003G119900 Sobic003G122800--Sobic007G082000 Sobic001G199500 Sobic001G199500 Sobic003G102700--Sobic001G199500 Sobic005G102800 Sobic005G102800 Sobic003G102700--Sobic005G102800 Sobic006G084300 Sobic006G084300 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic002G168000 Sobic002G168000 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic003G102700--Sobic002G367200 Sobic002G095300--Sobic002G187600 Sobic010G087100 Sobic010G087100 Sobic002G095300--Sobic010G087100 Sobic002G021200 Sobic002G021200 Sobic002G095300--Sobic002G021200 Sobic002G123600 Sobic002G123600 Sobic002G095300--Sobic002G123600 Sobic007G187700 Sobic007G187700 Sobic002G095300--Sobic007G187700 Sobic008G118100 Sobic008G118100 Sobic002G095300--Sobic008G118100 Sobic008G090400 Sobic008G090400 Sobic002G095300--Sobic008G090400 Sobic002G095300--Sobic002G168000 Sobic006G126800 Sobic006G126800 Sobic002G095300--Sobic006G126800 Sobic009G060600 Sobic009G060600 Sobic007G199800--Sobic009G060600 Sobic007G199800--Sobic007G050800 Sobic003G236150 Sobic003G236150 Sobic007G199800--Sobic003G236150 Sobic005G036200 Sobic005G036200 Sobic007G199800--Sobic005G036200 Sobic007G199800--Sobic002G367200 Sobic002G055800 Sobic002G055800 Sobic007G199800--Sobic002G055800 Sobic007G192200 Sobic007G192200 Sobic007G199800--Sobic007G192200 Sobic009G002200 Sobic009G002200 Sobic007G199800--Sobic009G002200 Sobic007G199800--Sobic009G012600 Sobic007G050800--Sobic009G002200 Sobic006G016700 Sobic006G016700 Sobic007G050800--Sobic006G016700 Sobic007G050800--Sobic008G118100 Sobic006G226000 Sobic006G226000 Sobic007G050800--Sobic006G226000 Sobic007G050800--Sobic002G168000 Sobic005G153000 Sobic005G153000 Sobic007G050800--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic007G050800--Sobic006G135800 Sobic007G050800--Sobic007G187700 Sobic007G050800--Sobic009G012600 Sobic001G507000 Sobic001G507000 Sobic005G068800--Sobic001G507000 Sobic004G156200 Sobic004G156200 Sobic005G068800--Sobic004G156200 Sobic004G095200 Sobic004G095200 Sobic005G068800--Sobic004G095200 Sobic006G120600 Sobic006G120600 Sobic005G068800--Sobic006G120600 Sobic009G146250 Sobic009G146250 Sobic005G068800--Sobic009G146250 Sobic006G195500 Sobic006G195500 Sobic005G068800--Sobic006G195500 Sobic003G183700 Sobic003G183700 Sobic005G068800--Sobic003G183700 Sobic005G068800--Sobic002G021200 Sobic009G052100 Sobic009G052100 Sobic005G068800--Sobic009G052100 Sobic009G224300--Sobic003G147500 Sobic009G224300--Sobic006G016700 Sobic004G286200 Sobic004G286200 Sobic009G224300--Sobic004G286200 Sobic001G493100 Sobic001G493100 Sobic009G224300--Sobic001G493100 Sobic007G219100 Sobic007G219100 Sobic009G224300--Sobic007G219100 Sobic009G207400 Sobic009G207400 Sobic009G224300--Sobic009G207400 Sobic003G350400 Sobic003G350400 Sobic009G224300--Sobic003G350400 Sobic009G224300--Sobic007G082000 Sobic010G257000 Sobic010G257000 Sobic009G224300--Sobic010G257000 Sobic007G082000--Sobic009G224300 Sobic007G082000--Sobic003G326500 Sobic010G214800 Sobic010G214800 Sobic007G082000--Sobic010G214800 Sobic004G200700 Sobic004G200700 Sobic007G082000--Sobic004G200700 Sobic006G262501 Sobic006G262501 Sobic007G082000--Sobic006G262501 Sobic007G050900 Sobic007G050900 Sobic007G082000--Sobic007G050900 Sobic007G082000--Sobic002G367200 Sobic003G184666 Sobic003G184666 Sobic007G082000--Sobic003G184666 Sobic002G266300 Sobic002G266300 Sobic007G082000--Sobic002G266300
Octagon: transcription factors


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