Gene annotation
Transcriptome id Sobic.003G122800.1,Sobic.003G122800.2
Synonym Sb03g010400
Functional annotation translin, putative, expressed
UniProt A0A1B6Q2R7 , A0A1B6Q2T9
Pfam PF01997
Panther DB PTHR10741 PTHR10741:SF5
NCBI CDD KOG3066; Translin-associated protein X
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03780 : Translin family protein
RAP-DB (Rice) LOC_Os01g16100.1 : translin, putative, expressed
MaizeGDB (Corn) Zm00025a035275
Brachypodium KQK03781
Barley HORVU3Hr1G037310.3 , HORVU3Hr1G037310.2 , HORVU3Hr1G037310.1 , HORVU3Hr1G037310.6 , HORVU3Hr1G037310.5 , HORVU3Hr1G037310.4
Wheat TraesCS3D02G186600 , TraesCS3B02G211800 , TraesCS3A02G182000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G122800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
2 Sobic.008G162100 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
3 Sobic.009G028100 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
4 Sobic.003G129300 uridine kinase, putative, expressed -
5 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
6 Sobic.003G326500 apurinic endonuclease-redox protein, putative, expressed K01142: E3.1.11.2, exodeoxyribonuclease III
7 Sobic.003G102700 exostosin family protein, putative, expressed -
8 Sobic.003G119900 inositol-1-monophosphatase, putative, expressed K18649: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase
9 Sobic.007G082000 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.008G175400 U-box domain-containing protein, putative, expressed -
11 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.007G194500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
13 Sobic.002G304400 expressed protein -
14 Sobic.004G033200 expressed protein -
15 Sobic.005G036200 protein of unknown function containing protein, expressed -
16 Sobic.008G151432 - K15208: snRNA-activating protein complex subunit 1
17 Sobic.003G306400 holliday junction resolvase, putative, expressed K07447: putative holliday junction resolvase
18 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
19 Sobic.005G034200 OsFBX114 - F-box domain containing protein, expressed -
20 Sobic.001G403400 malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor, putative, expressed K00645: fabD, MCAT, [acyl-carrier-protein] S-malonyltransferase


Gene co-expression network
sample Sobic003G122800 Sobic003G122800 Sobic002G367200 Sobic002G367200 Sobic003G122800--Sobic002G367200 Sobic008G162100 Sobic008G162100 Sobic003G122800--Sobic008G162100 Sobic009G028100 Sobic009G028100 Sobic003G122800--Sobic009G028100 Sobic003G129300 Sobic003G129300 Sobic003G122800--Sobic003G129300 Sobic002G095300 Sobic002G095300 Sobic003G122800--Sobic002G095300 Sobic003G326500 Sobic003G326500 Sobic003G122800--Sobic003G326500 Sobic003G102700 Sobic003G102700 Sobic003G122800--Sobic003G102700 Sobic003G119900 Sobic003G119900 Sobic003G122800--Sobic003G119900 Sobic007G082000 Sobic007G082000 Sobic003G122800--Sobic007G082000 Sobic002G367200--Sobic009G028100 Sobic002G367200--Sobic003G122800 Sobic002G367200--Sobic003G102700 Sobic002G367200--Sobic002G095300 Sobic007G199800 Sobic007G199800 Sobic002G367200--Sobic007G199800 Sobic007G050800 Sobic007G050800 Sobic002G367200--Sobic007G050800 Sobic005G068800 Sobic005G068800 Sobic002G367200--Sobic005G068800 Sobic009G224300 Sobic009G224300 Sobic002G367200--Sobic009G224300 Sobic002G367200--Sobic007G082000 Sobic009G113100 Sobic009G113100 Sobic008G162100--Sobic009G113100 Sobic008G162100--Sobic003G122800 Sobic001G334100 Sobic001G334100 Sobic008G162100--Sobic001G334100 Sobic001G004100 Sobic001G004100 Sobic008G162100--Sobic001G004100 Sobic001G013300 Sobic001G013300 Sobic008G162100--Sobic001G013300 Sobic010G110000 Sobic010G110000 Sobic008G162100--Sobic010G110000 Sobic001G033900 Sobic001G033900 Sobic008G162100--Sobic001G033900 Sobic002G208400 Sobic002G208400 Sobic008G162100--Sobic002G208400 Sobic010G141600 Sobic010G141600 Sobic008G162100--Sobic010G141600 Sobic009G028100--Sobic002G367200 Sobic003G147500 Sobic003G147500 Sobic009G028100--Sobic003G147500 Sobic009G012600 Sobic009G012600 Sobic009G028100--Sobic009G012600 Sobic001G460100 Sobic001G460100 Sobic009G028100--Sobic001G460100 Sobic002G238500 Sobic002G238500 Sobic009G028100--Sobic002G238500 Sobic009G028100--Sobic003G122800 Sobic009G028100--Sobic007G050800 Sobic004G291200 Sobic004G291200 Sobic009G028100--Sobic004G291200 Sobic002G158500 Sobic002G158500 Sobic009G028100--Sobic002G158500 Sobic001G229300 Sobic001G229300 Sobic003G129300--Sobic001G229300 Sobic001G123600 Sobic001G123600 Sobic003G129300--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic003G129300--Sobic002G142700 Sobic010G065600 Sobic010G065600 Sobic003G129300--Sobic010G065600 Sobic003G129300--Sobic002G208400 Sobic009G063800 Sobic009G063800 Sobic003G129300--Sobic009G063800 Sobic003G129300--Sobic003G119900 Sobic001G191900 Sobic001G191900 Sobic003G129300--Sobic001G191900 Sobic001G465500 Sobic001G465500 Sobic003G129300--Sobic001G465500 Sobic002G187600 Sobic002G187600 Sobic002G095300--Sobic002G187600 Sobic010G087100 Sobic010G087100 Sobic002G095300--Sobic010G087100 Sobic002G021200 Sobic002G021200 Sobic002G095300--Sobic002G021200 Sobic002G123600 Sobic002G123600 Sobic002G095300--Sobic002G123600 Sobic007G187700 Sobic007G187700 Sobic002G095300--Sobic007G187700 Sobic008G118100 Sobic008G118100 Sobic002G095300--Sobic008G118100 Sobic008G090400 Sobic008G090400 Sobic002G095300--Sobic008G090400 Sobic002G168000 Sobic002G168000 Sobic002G095300--Sobic002G168000 Sobic006G126800 Sobic006G126800 Sobic002G095300--Sobic006G126800 Sobic003G183466 Sobic003G183466 Sobic003G326500--Sobic003G183466 Sobic009G178500 Sobic009G178500 Sobic003G326500--Sobic009G178500 Sobic003G326500--Sobic002G095300 Sobic008G141900 Sobic008G141900 Sobic003G326500--Sobic008G141900 Sobic003G326500--Sobic007G082000 Sobic002G383700 Sobic002G383700 Sobic003G326500--Sobic002G383700 Sobic003G326500--Sobic004G291200 Sobic002G286632 Sobic002G286632 Sobic003G326500--Sobic002G286632 Sobic003G045450 Sobic003G045450 Sobic003G326500--Sobic003G045450 Sobic001G199500 Sobic001G199500 Sobic003G102700--Sobic001G199500 Sobic005G102800 Sobic005G102800 Sobic003G102700--Sobic005G102800 Sobic006G084300 Sobic006G084300 Sobic003G102700--Sobic006G084300 Sobic003G102700--Sobic002G187600 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic003G102700--Sobic002G367200 Sobic004G014100 Sobic004G014100 Sobic003G119900--Sobic004G014100 Sobic008G174500 Sobic008G174500 Sobic003G119900--Sobic008G174500 Sobic003G119900--Sobic003G129300 Sobic007G167800 Sobic007G167800 Sobic003G119900--Sobic007G167800 Sobic010G152000 Sobic010G152000 Sobic003G119900--Sobic010G152000 Sobic006G127200 Sobic006G127200 Sobic003G119900--Sobic006G127200 Sobic008G160600 Sobic008G160600 Sobic003G119900--Sobic008G160600 Sobic003G217500 Sobic003G217500 Sobic003G119900--Sobic003G217500 Sobic010G223500 Sobic010G223500 Sobic003G119900--Sobic010G223500 Sobic007G082000--Sobic009G224300 Sobic007G082000--Sobic003G326500 Sobic010G214800 Sobic010G214800 Sobic007G082000--Sobic010G214800 Sobic004G200700 Sobic004G200700 Sobic007G082000--Sobic004G200700 Sobic006G262501 Sobic006G262501 Sobic007G082000--Sobic006G262501 Sobic007G050900 Sobic007G050900 Sobic007G082000--Sobic007G050900 Sobic007G082000--Sobic002G367200 Sobic003G184666 Sobic003G184666 Sobic007G082000--Sobic003G184666 Sobic002G266300 Sobic002G266300 Sobic007G082000--Sobic002G266300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.