Gene annotation
Transcriptome id Sobic.007G194500.1
Synonym Sb07g026305
Functional annotation ribosomal protein L22, putative, expressed
UniProt A0A1Z5RAT5
Pfam PF00237
Panther DB PTHR11593
NCBI CDD KOG3353; 60S ribosomal protein L22
KEGG Orthology K02880; RP-L17e, large subunit ribosomal protein L17e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0015934large ribosomal subunit


Orthologs (automatic annotation)
TAIR AT1G27400 : Ribosomal protein L22p/L17e family protein
RAP-DB (Rice) LOC_Os09g08430.1 : ribosomal protein L22, putative, expressed
MaizeGDB (Corn) Zm00025a005253 , Zm00025a030392
Brachypodium KQJ99107
Barley HORVU7Hr1G054010.6 , HORVU7Hr1G054010.5 , HORVU7Hr1G054010.4 , HORVU7Hr1G054010.3 , HORVU7Hr1G054010.2 , HORVU7Hr1G054010.1
Wheat TraesCS7D02G260500 , TraesCS7A02G259500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G036200 protein of unknown function containing protein, expressed -
2 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.006G262501 - -
4 Sobic.007G192200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.007G050900 - -
6 Sobic.010G054800 LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.003G129300 uridine kinase, putative, expressed -
8 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
9 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
10 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
11 Sobic.004G033200 expressed protein -
12 Sobic.005G139300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amidase, putative, expressed -
13 Sobic.003G326500 apurinic endonuclease-redox protein, putative, expressed K01142: E3.1.11.2, exodeoxyribonuclease III
14 Sobic.007G082000 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.002G420400 - -
16 Sobic.008G118100 kelch repeat protein, putative, expressed -
17 Sobic.010G152000 powdery mildew resistant protein 5, putative, expressed -
18 Sobic.004G291200 - -
19 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
20 Sobic.006G212900 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9


Gene co-expression network
sample Sobic007G194500 Sobic007G194500 Sobic005G036200 Sobic005G036200 Sobic007G194500--Sobic005G036200 Sobic009G012600 Sobic009G012600 Sobic007G194500--Sobic009G012600 Sobic006G262501 Sobic006G262501 Sobic007G194500--Sobic006G262501 Sobic007G192200 Sobic007G192200 Sobic007G194500--Sobic007G192200 Sobic007G050900 Sobic007G050900 Sobic007G194500--Sobic007G050900 Sobic010G054800 Sobic010G054800 Sobic007G194500--Sobic010G054800 Sobic003G129300 Sobic003G129300 Sobic007G194500--Sobic003G129300 Sobic010G087100 Sobic010G087100 Sobic007G194500--Sobic010G087100 Sobic004G242200 Sobic004G242200 Sobic007G194500--Sobic004G242200 Sobic005G036200--Sobic007G192200 Sobic002G420400 Sobic002G420400 Sobic005G036200--Sobic002G420400 Sobic009G002200 Sobic009G002200 Sobic005G036200--Sobic009G002200 Sobic001G375800 Sobic001G375800 Sobic005G036200--Sobic001G375800 Sobic005G036200--Sobic010G054800 Sobic001G456400 Sobic001G456400 Sobic005G036200--Sobic001G456400 Sobic009G250500 Sobic009G250500 Sobic005G036200--Sobic009G250500 Sobic005G036200--Sobic004G242200 Sobic010G131500 Sobic010G131500 Sobic005G036200--Sobic010G131500 Sobic007G050800 Sobic007G050800 Sobic009G012600--Sobic007G050800 Sobic005G045700 Sobic005G045700 Sobic009G012600--Sobic005G045700 Sobic006G226000 Sobic006G226000 Sobic009G012600--Sobic006G226000 Sobic009G012600--Sobic007G192200 Sobic009G012600--Sobic009G002200 Sobic009G012600--Sobic005G036200 Sobic010G037901 Sobic010G037901 Sobic009G012600--Sobic010G037901 Sobic009G012600--Sobic006G262501 Sobic008G191850 Sobic008G191850 Sobic009G012600--Sobic008G191850 Sobic006G262501--Sobic005G045700 Sobic002G127900 Sobic002G127900 Sobic006G262501--Sobic002G127900 Sobic006G262501--Sobic005G036200 Sobic008G118100 Sobic008G118100 Sobic006G262501--Sobic008G118100 Sobic003G368901 Sobic003G368901 Sobic006G262501--Sobic003G368901 Sobic006G262501--Sobic009G012600 Sobic006G262501--Sobic007G050800 Sobic005G139300 Sobic005G139300 Sobic006G262501--Sobic005G139300 Sobic010G175000 Sobic010G175000 Sobic006G262501--Sobic010G175000 Sobic007G192200--Sobic005G036200 Sobic006G135800 Sobic006G135800 Sobic007G192200--Sobic006G135800 Sobic003G140800 Sobic003G140800 Sobic007G192200--Sobic003G140800 Sobic007G192200--Sobic009G002200 Sobic007G192200--Sobic006G226000 Sobic007G192200--Sobic009G012600 Sobic007G192200--Sobic004G242200 Sobic005G102800 Sobic005G102800 Sobic007G192200--Sobic005G102800 Sobic009G031800 Sobic009G031800 Sobic007G192200--Sobic009G031800 Sobic007G050900--Sobic010G054800 Sobic005G073700 Sobic005G073700 Sobic007G050900--Sobic005G073700 Sobic003G100000 Sobic003G100000 Sobic007G050900--Sobic003G100000 Sobic001G254700 Sobic001G254700 Sobic007G050900--Sobic001G254700 Sobic006G047700 Sobic006G047700 Sobic007G050900--Sobic006G047700 Sobic007G050900--Sobic009G031800 Sobic007G050900--Sobic009G250500 Sobic003G419500 Sobic003G419500 Sobic007G050900--Sobic003G419500 Sobic002G010000 Sobic002G010000 Sobic007G050900--Sobic002G010000 Sobic010G054800--Sobic006G047700 Sobic010G054800--Sobic005G073700 Sobic010G054800--Sobic007G050900 Sobic010G195450 Sobic010G195450 Sobic010G054800--Sobic010G195450 Sobic010G054800--Sobic003G100000 Sobic004G254500 Sobic004G254500 Sobic010G054800--Sobic004G254500 Sobic010G054800--Sobic001G254700 Sobic002G244800 Sobic002G244800 Sobic010G054800--Sobic002G244800 Sobic010G054800--Sobic009G250500 Sobic001G229300 Sobic001G229300 Sobic003G129300--Sobic001G229300 Sobic001G123600 Sobic001G123600 Sobic003G129300--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic003G129300--Sobic002G142700 Sobic010G065600 Sobic010G065600 Sobic003G129300--Sobic010G065600 Sobic002G208400 Sobic002G208400 Sobic003G129300--Sobic002G208400 Sobic009G063800 Sobic009G063800 Sobic003G129300--Sobic009G063800 Sobic003G119900 Sobic003G119900 Sobic003G129300--Sobic003G119900 Sobic001G191900 Sobic001G191900 Sobic003G129300--Sobic001G191900 Sobic001G465500 Sobic001G465500 Sobic003G129300--Sobic001G465500 Sobic002G095300 Sobic002G095300 Sobic010G087100--Sobic002G095300 Sobic003G379900 Sobic003G379900 Sobic010G087100--Sobic003G379900 Sobic001G506300 Sobic001G506300 Sobic010G087100--Sobic001G506300 Sobic002G131100 Sobic002G131100 Sobic010G087100--Sobic002G131100 Sobic008G090400 Sobic008G090400 Sobic010G087100--Sobic008G090400 Sobic010G087100--Sobic008G118100 Sobic002G238800 Sobic002G238800 Sobic010G087100--Sobic002G238800 Sobic008G160600 Sobic008G160600 Sobic010G087100--Sobic008G160600 Sobic010G087100--Sobic009G002200 Sobic004G242200--Sobic002G420400 Sobic004G242200--Sobic001G456400 Sobic004G242200--Sobic005G036200 Sobic004G242200--Sobic009G002200 Sobic004G242200--Sobic001G375800 Sobic004G242200--Sobic007G192200 Sobic004G339900 Sobic004G339900 Sobic004G242200--Sobic004G339900 Sobic010G152000 Sobic010G152000 Sobic004G242200--Sobic010G152000 Sobic004G071050 Sobic004G071050 Sobic004G242200--Sobic004G071050
Octagon: transcription factors


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