Gene annotation
Transcriptome id Sobic.006G212900.2,Sobic.006G212900.1
Synonym Sb06g028320
Functional annotation expressed protein
UniProt C5YFQ1
Pfam PF04078
Panther DB PTHR12262
NCBI CDD KOG3036; Protein involved in cell differentiation/sexual development
KEGG Orthology K12606; RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
Gene Ontology GO:0006402; mRNA catabolic process


Orthologs (automatic annotation)
TAIR AT3G20800 : Cell differentiation, Rcd1-like protein
RAP-DB (Rice) LOC_Os04g52340.1 : expressed protein
MaizeGDB (Corn) Zm00025a009815
Brachypodium KQJ84558
Barley HORVU1Hr1G009040.5 , HORVU1Hr1G009040.6 , HORVU2Hr1G099210.3 , HORVU2Hr1G099210.2 , HORVU2Hr1G099210.1 , HORVU2Hr1G099210.4 , HORVU2Hr1G099240.1
Wheat TraesCS2D02G421400 , TraesCS2A02G423600 , TraesCS2A02G423600 , TraesCS2B02G443100
Populus -


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cDNA sequences
Sobic.006G212900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
2 Sobic.004G247100 peptidase, putative, expressed -
3 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
4 Sobic.009G195700 hydrolase, alpha/beta fold family domain containing protein, expressed K01259: proline iminopeptidase
5 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
6 Sobic.003G129300 uridine kinase, putative, expressed -
7 Sobic.008G116600 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed -
8 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
9 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
10 Sobic.002G369701 - K06877: DEAD/DEAH box helicase domain-containing protein
11 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
12 Sobic.002G208400 regulator protein, putative, expressed -
13 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
14 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
15 Sobic.003G200600 CBS domain containing membrane protein, putative, expressed -
16 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
17 Sobic.001G229300 expressed protein -
18 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
19 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.003G395300 TBC domain containing protein, expressed -


Gene co-expression network
sample Sobic006G212900 Sobic006G212900 Sobic003G023200 Sobic003G023200 Sobic006G212900--Sobic003G023200 Sobic004G247100 Sobic004G247100 Sobic006G212900--Sobic004G247100 Sobic003G193500 Sobic003G193500 Sobic006G212900--Sobic003G193500 Sobic009G195700 Sobic009G195700 Sobic006G212900--Sobic009G195700 Sobic004G256300 Sobic004G256300 Sobic006G212900--Sobic004G256300 Sobic003G129300 Sobic003G129300 Sobic006G212900--Sobic003G129300 Sobic008G116600 Sobic008G116600 Sobic006G212900--Sobic008G116600 Sobic003G222700 Sobic003G222700 Sobic006G212900--Sobic003G222700 Sobic001G467100 Sobic001G467100 Sobic006G212900--Sobic001G467100 Sobic002G066800 Sobic002G066800 Sobic003G023200--Sobic002G066800 Sobic003G023200--Sobic006G212900 Sobic010G250000 Sobic010G250000 Sobic003G023200--Sobic010G250000 Sobic003G256800 Sobic003G256800 Sobic003G023200--Sobic003G256800 Sobic001G097900 Sobic001G097900 Sobic003G023200--Sobic001G097900 Sobic005G087300 Sobic005G087300 Sobic003G023200--Sobic005G087300 Sobic002G426100 Sobic002G426100 Sobic003G023200--Sobic002G426100 Sobic001G229300 Sobic001G229300 Sobic003G023200--Sobic001G229300 Sobic007G122700 Sobic007G122700 Sobic003G023200--Sobic007G122700 Sobic004G247100--Sobic006G212900 Sobic004G247100--Sobic001G467100 Sobic004G247100--Sobic009G195700 Sobic007G047600 Sobic007G047600 Sobic004G247100--Sobic007G047600 Sobic002G116500 Sobic002G116500 Sobic004G247100--Sobic002G116500 Sobic007G145400 Sobic007G145400 Sobic004G247100--Sobic007G145400 Sobic007G051400 Sobic007G051400 Sobic004G247100--Sobic007G051400 Sobic007G102500 Sobic007G102500 Sobic004G247100--Sobic007G102500 Sobic001G461300 Sobic001G461300 Sobic004G247100--Sobic001G461300 Sobic003G302200 Sobic003G302200 Sobic003G193500--Sobic003G302200 Sobic003G182300 Sobic003G182300 Sobic003G193500--Sobic003G182300 Sobic009G128500 Sobic009G128500 Sobic003G193500--Sobic009G128500 Sobic007G042900 Sobic007G042900 Sobic003G193500--Sobic007G042900 Sobic006G039400 Sobic006G039400 Sobic003G193500--Sobic006G039400 Sobic001G019800 Sobic001G019800 Sobic003G193500--Sobic001G019800 Sobic010G169900 Sobic010G169900 Sobic003G193500--Sobic010G169900 Sobic002G079000 Sobic002G079000 Sobic003G193500--Sobic002G079000 Sobic009G077600 Sobic009G077600 Sobic003G193500--Sobic009G077600 Sobic009G195700--Sobic004G247100 Sobic009G195700--Sobic006G212900 Sobic002G142700 Sobic002G142700 Sobic009G195700--Sobic002G142700 Sobic001G403400 Sobic001G403400 Sobic009G195700--Sobic001G403400 Sobic009G195700--Sobic002G116500 Sobic008G059900 Sobic008G059900 Sobic009G195700--Sobic008G059900 Sobic001G004100 Sobic001G004100 Sobic009G195700--Sobic001G004100 Sobic010G073500 Sobic010G073500 Sobic009G195700--Sobic010G073500 Sobic010G172400 Sobic010G172400 Sobic009G195700--Sobic010G172400 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic003G129300--Sobic001G229300 Sobic001G123600 Sobic001G123600 Sobic003G129300--Sobic001G123600 Sobic003G129300--Sobic002G142700 Sobic010G065600 Sobic010G065600 Sobic003G129300--Sobic010G065600 Sobic002G208400 Sobic002G208400 Sobic003G129300--Sobic002G208400 Sobic009G063800 Sobic009G063800 Sobic003G129300--Sobic009G063800 Sobic003G119900 Sobic003G119900 Sobic003G129300--Sobic003G119900 Sobic001G191900 Sobic001G191900 Sobic003G129300--Sobic001G191900 Sobic001G465500 Sobic001G465500 Sobic003G129300--Sobic001G465500 Sobic004G033200 Sobic004G033200 Sobic008G116600--Sobic004G033200 Sobic008G116600--Sobic006G212900 Sobic002G332200 Sobic002G332200 Sobic008G116600--Sobic002G332200 Sobic002G385300 Sobic002G385300 Sobic008G116600--Sobic002G385300 Sobic008G116600--Sobic009G195700 Sobic004G058600 Sobic004G058600 Sobic008G116600--Sobic004G058600 Sobic004G066500 Sobic004G066500 Sobic008G116600--Sobic004G066500 Sobic003G126800 Sobic003G126800 Sobic008G116600--Sobic003G126800 Sobic003G200600 Sobic003G200600 Sobic008G116600--Sobic003G200600 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic001G467100--Sobic010G172400 Sobic001G474400 Sobic001G474400 Sobic001G467100--Sobic001G474400 Sobic001G099900 Sobic001G099900 Sobic001G467100--Sobic001G099900 Sobic001G467100--Sobic003G222700 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G161700 Sobic001G161700 Sobic001G467100--Sobic001G161700 Sobic005G110499 Sobic005G110499 Sobic001G467100--Sobic005G110499
Octagon: transcription factors


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