Gene annotation
Transcriptome id Sobic.002G369701.3,Sobic.002G369701.4,Sobic.002G369701.2,Sobic.002G369701.1
Synonym -
Functional annotation -
UniProt A0A1W0W790 , A0A1W0W752 , A0A1W0W749 , A0A1W0W734
Pfam PF00271 PF09369 PF00270
Panther DB PTHR24031 PTHR24031:SF252
NCBI CDD -
KEGG Orthology K06877; DEAD/DEAH box helicase domain-containing protein
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G08110 : nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases
RAP-DB (Rice) LOC_Os07g41564.1 : DEAD/DEAH box helicase domain protein, putative, expressed
MaizeGDB (Corn) Zm00025a048710
Brachypodium PNT74786 , KQK15322
Barley -
Wheat TraesCS2A02G173600 , TraesCS2D02G180800 , TraesCS2B02G199900 , TraesCS2B02G199900 , TraesCS2D02G180800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
2 Sobic.001G542450 - -
3 Sobic.004G330000 - K14807: DDX51, ATP-dependent RNA helicase DDX51/DBP6
4 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
6 Sobic.003G222000 metallo-beta-lactamase, putative, expressed K13148: CPSF3L, integrator complex subunit 11
7 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
8 Sobic.006G212900 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
9 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
10 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
11 Sobic.007G017200 OsFBX142 - F-box domain containing protein, expressed -
12 Sobic.002G395700 DNA repair protein RAD51 homolog 4, putative, expressed K10871: RAD51L3, RAD51-like protein 3
13 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
14 Sobic.001G386100 RNA recognition motif containing protein, putative, expressed K13157: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
15 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
16 Sobic.004G020100 division protein, putative, expressed -
17 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
18 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
19 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
20 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -


Gene co-expression network
sample Sobic002G369701 Sobic002G369701 Sobic010G086600 Sobic010G086600 Sobic002G369701--Sobic010G086600 Sobic001G542450 Sobic001G542450 Sobic002G369701--Sobic001G542450 Sobic004G330000 Sobic004G330000 Sobic002G369701--Sobic004G330000 Sobic001G004100 Sobic001G004100 Sobic002G369701--Sobic001G004100 Sobic002G398700 Sobic002G398700 Sobic002G369701--Sobic002G398700 Sobic003G222000 Sobic003G222000 Sobic002G369701--Sobic003G222000 Sobic004G031300 Sobic004G031300 Sobic002G369701--Sobic004G031300 Sobic006G212900 Sobic006G212900 Sobic002G369701--Sobic006G212900 Sobic007G042900 Sobic007G042900 Sobic002G369701--Sobic007G042900 Sobic010G086600--Sobic007G042900 Sobic002G193300 Sobic002G193300 Sobic010G086600--Sobic002G193300 Sobic010G086600--Sobic001G542450 Sobic008G002300 Sobic008G002300 Sobic010G086600--Sobic008G002300 Sobic002G292900 Sobic002G292900 Sobic010G086600--Sobic002G292900 Sobic010G089400 Sobic010G089400 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic007G180600 Sobic007G180600 Sobic010G086600--Sobic007G180600 Sobic001G542450--Sobic008G002300 Sobic003G416700 Sobic003G416700 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic004G330000--Sobic010G086600 Sobic004G330000--Sobic002G193300 Sobic004G330000--Sobic007G042900 Sobic004G330000--Sobic002G369701 Sobic002G313900 Sobic002G313900 Sobic004G330000--Sobic002G313900 Sobic001G340300 Sobic001G340300 Sobic004G330000--Sobic001G340300 Sobic004G330000--Sobic008G002300 Sobic004G330000--Sobic001G542450 Sobic003G132000 Sobic003G132000 Sobic004G330000--Sobic003G132000 Sobic001G004100--Sobic004G031300 Sobic007G187600 Sobic007G187600 Sobic001G004100--Sobic007G187600 Sobic001G013300 Sobic001G013300 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G373000 Sobic001G373000 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic006G106300 Sobic006G106300 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic001G015400 Sobic001G015400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic003G222000--Sobic002G398700 Sobic010G081700 Sobic010G081700 Sobic003G222000--Sobic010G081700 Sobic002G395700 Sobic002G395700 Sobic003G222000--Sobic002G395700 Sobic003G222000--Sobic002G369701 Sobic001G206500 Sobic001G206500 Sobic003G222000--Sobic001G206500 Sobic003G222000--Sobic001G015400 Sobic002G279800 Sobic002G279800 Sobic003G222000--Sobic002G279800 Sobic003G222000--Sobic010G091400 Sobic003G222000--Sobic006G106300 Sobic004G031300--Sobic001G004100 Sobic006G245900 Sobic006G245900 Sobic004G031300--Sobic006G245900 Sobic006G191200 Sobic006G191200 Sobic004G031300--Sobic006G191200 Sobic005G000300 Sobic005G000300 Sobic004G031300--Sobic005G000300 Sobic006G125500 Sobic006G125500 Sobic004G031300--Sobic006G125500 Sobic002G296400 Sobic002G296400 Sobic004G031300--Sobic002G296400 Sobic006G002800 Sobic006G002800 Sobic004G031300--Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic003G023200 Sobic003G023200 Sobic006G212900--Sobic003G023200 Sobic004G247100 Sobic004G247100 Sobic006G212900--Sobic004G247100 Sobic003G193500 Sobic003G193500 Sobic006G212900--Sobic003G193500 Sobic009G195700 Sobic009G195700 Sobic006G212900--Sobic009G195700 Sobic004G256300 Sobic004G256300 Sobic006G212900--Sobic004G256300 Sobic003G129300 Sobic003G129300 Sobic006G212900--Sobic003G129300 Sobic008G116600 Sobic008G116600 Sobic006G212900--Sobic008G116600 Sobic003G222700 Sobic003G222700 Sobic006G212900--Sobic003G222700 Sobic001G467100 Sobic001G467100 Sobic006G212900--Sobic001G467100 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600
Octagon: transcription factors


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