Gene annotation
Transcriptome id Sobic.001G004100.2
Synonym Sb01g000460
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WRW3
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF358
NCBI CDD KOG2096; WD40 repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G00090 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g64110.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009126
Brachypodium KQK11991
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G004100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
2 Sobic.007G187600 pentatricopeptide, putative, expressed -
3 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
4 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
5 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
6 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
7 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
8 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
9 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
10 Sobic.005G106200 expressed protein K10290: F-box protein 3
11 Sobic.003G052800 RST1, putative, expressed -
12 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
13 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
14 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
15 Sobic.001G023800 expressed protein -
16 Sobic.010G186600 expressed protein -
17 Sobic.003G214700 transcriptional corepressor LEUNIG, putative, expressed -
18 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
19 Sobic.006G245900 FAR1 family protein, expressed -
20 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic001G004100 Sobic001G004100 Sobic004G031300 Sobic004G031300 Sobic001G004100--Sobic004G031300 Sobic007G187600 Sobic007G187600 Sobic001G004100--Sobic007G187600 Sobic001G013300 Sobic001G013300 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G373000 Sobic001G373000 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic004G031300--Sobic001G004100 Sobic006G245900 Sobic006G245900 Sobic004G031300--Sobic006G245900 Sobic006G191200 Sobic006G191200 Sobic004G031300--Sobic006G191200 Sobic005G000300 Sobic005G000300 Sobic004G031300--Sobic005G000300 Sobic006G125500 Sobic006G125500 Sobic004G031300--Sobic006G125500 Sobic002G296400 Sobic002G296400 Sobic004G031300--Sobic002G296400 Sobic006G002800 Sobic006G002800 Sobic004G031300--Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic001G042200 Sobic001G042200 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic010G077500 Sobic010G077500 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic009G113100--Sobic001G013300 Sobic006G061100 Sobic006G061100 Sobic009G113100--Sobic006G061100 Sobic010G186600 Sobic010G186600 Sobic009G255600--Sobic010G186600 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic003G246000 Sobic003G246000 Sobic001G408600--Sobic003G246000 Sobic001G408600--Sobic001G373000 Sobic001G461300 Sobic001G461300 Sobic001G408600--Sobic001G461300 Sobic007G089800 Sobic007G089800 Sobic001G408600--Sobic007G089800 Sobic001G408600--Sobic001G004100 Sobic006G125900 Sobic006G125900 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic001G408600--Sobic006G002800 Sobic001G145400 Sobic001G145400 Sobic001G408600--Sobic001G145400 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic002G399900 Sobic002G399900 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G142700--Sobic002G208400 Sobic004G256300 Sobic004G256300 Sobic002G142700--Sobic004G256300 Sobic003G221500 Sobic003G221500 Sobic002G142700--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic002G142700--Sobic003G222700 Sobic001G229300 Sobic001G229300 Sobic002G142700--Sobic001G229300 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic001G477700 Sobic001G477700 Sobic001G034500--Sobic001G477700 Sobic003G284000 Sobic003G284000 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic007G042900 Sobic007G042900 Sobic001G034500--Sobic007G042900
Octagon: transcription factors


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