Gene annotation
Transcriptome id Sobic.003G222000.1
Synonym EDA26, ATCPSF73-II, Sb03g028040, CPSF73-II
Functional annotation metallo-beta-lactamase, putative, expressed
UniProt C5XR29
Pfam PF07521 PF16661 PF10996
Panther DB PTHR11203 PTHR11203:SF37
NCBI CDD -
KEGG Orthology K13148; CPSF3L, integrator complex subunit 11
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01730 : cleavage and polyadenylation specificity factor 73 kDa subunit-II
RAP-DB (Rice) LOC_Os09g23380.1 : metallo-beta-lactamase, putative, expressed
MaizeGDB (Corn) Zm00025a028398
Brachypodium KQJ90147 , KQJ90148 , KQJ90149 , KQJ90151 , KQJ90150 , KQJ90152
Barley HORVU5Hr1G060570.37 , HORVU5Hr1G060570.36 , HORVU5Hr1G060570.34 , HORVU5Hr1G060570.33 , HORVU5Hr1G060570.32 , HORVU5Hr1G060570.31 , HORVU5Hr1G060570.30 , HORVU5Hr1G060570.39 , HORVU5Hr1G060570.27 , HORVU5Hr1G060570.24 , HORVU5Hr1G060570.25 , HORVU5Hr1G060570.21 , HORVU5Hr1G060570.23 , HORVU5Hr1G060570.28 , HORVU5Hr1G060570.29 , HORVU5Hr1G060570.19 , HORVU5Hr1G060570.18 , HORVU5Hr1G060570.11 , HORVU5Hr1G060570.10 , HORVU5Hr1G060570.13 , HORVU5Hr1G060570.12 , HORVU5Hr1G060570.15 , HORVU5Hr1G060570.17 , HORVU5Hr1G060590.1 , HORVU5Hr1G060570.38 , HORVU5Hr1G060570.9 , HORVU5Hr1G060570.8 , HORVU5Hr1G060570.5 , HORVU5Hr1G060570.4 , HORVU5Hr1G060570.7 , HORVU5Hr1G060570.6 , HORVU5Hr1G060570.2 , HORVU5Hr1G060570.42 , HORVU5Hr1G060570.43 , HORVU5Hr1G060570.40 , HORVU5Hr1G060570.41 , HORVU5Hr1G060570.46 , HORVU5Hr1G060570.44 , HORVU5Hr1G060570.20
Wheat TraesCS5B02G202500 , TraesCS5A02G203800 , TraesCS5D02G210400
Populus PNT15791


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
2 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G395700 DNA repair protein RAD51 homolog 4, putative, expressed K10871: RAD51L3, RAD51-like protein 3
4 Sobic.002G369701 - K06877: DEAD/DEAH box helicase domain-containing protein
5 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
6 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
7 Sobic.002G279800 M phase phosphoprotein 10, putative, expressed K14559: U3 small nucleolar RNA-associated protein MPP10
8 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
9 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
10 Sobic.001G466500 PPR repeat containing protein, expressed -
11 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
12 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
13 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
14 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
15 Sobic.004G126000 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K18914: adrenodoxin-NADP+ reductase
16 Sobic.008G185800 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
17 Sobic.006G266700 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
18 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
19 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
20 Sobic.003G284000 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit


Gene co-expression network
sample Sobic003G222000 Sobic003G222000 Sobic002G398700 Sobic002G398700 Sobic003G222000--Sobic002G398700 Sobic010G081700 Sobic010G081700 Sobic003G222000--Sobic010G081700 Sobic002G395700 Sobic002G395700 Sobic003G222000--Sobic002G395700 Sobic002G369701 Sobic002G369701 Sobic003G222000--Sobic002G369701 Sobic001G206500 Sobic001G206500 Sobic003G222000--Sobic001G206500 Sobic001G015400 Sobic001G015400 Sobic003G222000--Sobic001G015400 Sobic002G279800 Sobic002G279800 Sobic003G222000--Sobic002G279800 Sobic010G091400 Sobic010G091400 Sobic003G222000--Sobic010G091400 Sobic006G106300 Sobic006G106300 Sobic003G222000--Sobic006G106300 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic002G398700--Sobic006G106300 Sobic002G398700--Sobic010G091400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic001G460500 Sobic001G460500 Sobic010G081700--Sobic001G460500 Sobic004G348600 Sobic004G348600 Sobic010G081700--Sobic004G348600 Sobic004G208500 Sobic004G208500 Sobic010G081700--Sobic004G208500 Sobic004G322300 Sobic004G322300 Sobic010G081700--Sobic004G322300 Sobic010G081700--Sobic002G398700 Sobic010G081700--Sobic006G106300 Sobic010G081700--Sobic002G408900 Sobic004G356200 Sobic004G356200 Sobic010G081700--Sobic004G356200 Sobic010G081700--Sobic002G150700 Sobic008G018800 Sobic008G018800 Sobic002G395700--Sobic008G018800 Sobic002G395700--Sobic003G222000 Sobic002G395700--Sobic002G369701 Sobic008G160500 Sobic008G160500 Sobic002G395700--Sobic008G160500 Sobic004G020100 Sobic004G020100 Sobic002G395700--Sobic004G020100 Sobic001G471000 Sobic001G471000 Sobic002G395700--Sobic001G471000 Sobic002G006401 Sobic002G006401 Sobic002G395700--Sobic002G006401 Sobic007G042900 Sobic007G042900 Sobic002G395700--Sobic007G042900 Sobic004G067400 Sobic004G067400 Sobic002G395700--Sobic004G067400 Sobic010G086600 Sobic010G086600 Sobic002G369701--Sobic010G086600 Sobic001G542450 Sobic001G542450 Sobic002G369701--Sobic001G542450 Sobic004G330000 Sobic004G330000 Sobic002G369701--Sobic004G330000 Sobic001G004100 Sobic001G004100 Sobic002G369701--Sobic001G004100 Sobic002G369701--Sobic002G398700 Sobic002G369701--Sobic003G222000 Sobic004G031300 Sobic004G031300 Sobic002G369701--Sobic004G031300 Sobic006G212900 Sobic006G212900 Sobic002G369701--Sobic006G212900 Sobic002G369701--Sobic007G042900 Sobic009G042100 Sobic009G042100 Sobic001G206500--Sobic009G042100 Sobic001G455800 Sobic001G455800 Sobic001G206500--Sobic001G455800 Sobic003G004300 Sobic003G004300 Sobic001G206500--Sobic003G004300 Sobic001G098400 Sobic001G098400 Sobic001G206500--Sobic001G098400 Sobic001G206500--Sobic003G222000 Sobic001G206500--Sobic010G081700 Sobic001G206500--Sobic004G031300 Sobic002G428100 Sobic002G428100 Sobic001G206500--Sobic002G428100 Sobic001G206500--Sobic001G004100 Sobic001G099900 Sobic001G099900 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic001G015400--Sobic006G106300 Sobic003G156500 Sobic003G156500 Sobic002G279800--Sobic003G156500 Sobic004G126000 Sobic004G126000 Sobic002G279800--Sobic004G126000 Sobic001G501400 Sobic001G501400 Sobic002G279800--Sobic001G501400 Sobic001G503900 Sobic001G503900 Sobic002G279800--Sobic001G503900 Sobic002G279800--Sobic003G222000 Sobic006G013100 Sobic006G013100 Sobic002G279800--Sobic006G013100 Sobic009G217200 Sobic009G217200 Sobic002G279800--Sobic009G217200 Sobic002G279800--Sobic001G206500 Sobic002G317100 Sobic002G317100 Sobic002G279800--Sobic002G317100 Sobic010G091400--Sobic002G398700 Sobic003G218200 Sobic003G218200 Sobic010G091400--Sobic003G218200 Sobic009G194000 Sobic009G194000 Sobic010G091400--Sobic009G194000 Sobic003G021600 Sobic003G021600 Sobic010G091400--Sobic003G021600 Sobic008G037700 Sobic008G037700 Sobic010G091400--Sobic008G037700 Sobic003G297700 Sobic003G297700 Sobic010G091400--Sobic003G297700 Sobic002G252400 Sobic002G252400 Sobic010G091400--Sobic002G252400 Sobic002G356200 Sobic002G356200 Sobic010G091400--Sobic002G356200 Sobic003G181700 Sobic003G181700 Sobic010G091400--Sobic003G181700 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic006G106300--Sobic003G021600 Sobic006G106300--Sobic002G398700 Sobic001G097900 Sobic001G097900 Sobic006G106300--Sobic001G097900 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic001G474400 Sobic001G474400 Sobic006G106300--Sobic001G474400 Sobic006G106300--Sobic002G364900
Octagon: transcription factors


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