Gene annotation
Transcriptome id Sobic.006G266700.1
Synonym Sb06g032890, ATPRMT6, PRMT6
Functional annotation methyltransferase, putative, expressed
UniProt C5YAI3
Pfam PF06325
Panther DB PTHR11006 PTHR11006:SF70
NCBI CDD KOG1499; Protein arginine N-methyltransferase PRMT1 and related enzymes
KEGG Orthology K11437; type I protein arginine methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0006479protein methylation


Orthologs (automatic annotation)
TAIR AT3G20020 : protein arginine methyltransferase 6
RAP-DB (Rice) LOC_Os04g58060.2 : methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a040484 , Zm00025a057380
Brachypodium KQJ85281
Barley HORVU2Hr1G119480.5 , HORVU2Hr1G119480.4 , HORVU2Hr1G119480.7 , HORVU2Hr1G119480.6 , HORVU2Hr1G119480.1 , HORVU2Hr1G119480.3 , HORVU2Hr1G119480.2 , HORVU2Hr1G119480.9 , HORVU2Hr1G119480.8 , HORVU1Hr1G044440.16 , HORVU1Hr1G044440.15 , HORVU1Hr1G044440.14 , HORVU1Hr1G044440.13 , HORVU1Hr1G044440.12 , HORVU1Hr1G044440.11 , HORVU1Hr1G044440.10 , HORVU1Hr1G044440.7 , HORVU1Hr1G044440.6 , HORVU2Hr1G119480.15 , HORVU1Hr1G044440.5 , HORVU1Hr1G044440.4 , HORVU1Hr1G044440.3 , HORVU1Hr1G044440.2 , HORVU1Hr1G044440.1 , HORVU1Hr1G044440.9 , HORVU1Hr1G044440.8 , HORVU2Hr1G119480.11 , HORVU2Hr1G119480.10 , HORVU2Hr1G119480.13 , HORVU2Hr1G119480.12 , HORVU2Hr1G119480.14 , HORVU2Hr1G119480.17 , HORVU2Hr1G119480.16 , HORVU2Hr1G119480.18
Wheat TraesCS2B02G590000 , TraesCS2B02G590000 , TraesCS2A02G554100 , TraesCS2A02G554100 , TraesCS2D02G560200 , TraesCS1A02G171700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G266700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G321600 PPR repeat domain containing protein, putative, expressed -
2 Sobic.007G209600 ENT domain containing protein, expressed -
3 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
4 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
5 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
6 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
7 Sobic.002G043000 HEN1, putative, expressed -
8 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
9 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
10 Sobic.003G360300 exostosin family domain containing protein, expressed -
11 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
12 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
13 Sobic.006G280100 SET domain containing protein, expressed -
14 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
15 Sobic.002G263700 bromodomain protein 103, putative, expressed -
16 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
17 Sobic.001G203500 pentatricopeptide, putative, expressed -
18 Sobic.006G041100 nuclear transport factor 2, putative, expressed -
19 Sobic.003G222000 metallo-beta-lactamase, putative, expressed K13148: CPSF3L, integrator complex subunit 11
20 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6


Gene co-expression network
sample Sobic006G266700 Sobic006G266700 Sobic003G321600 Sobic003G321600 Sobic006G266700--Sobic003G321600 Sobic007G209600 Sobic007G209600 Sobic006G266700--Sobic007G209600 Sobic002G078100 Sobic002G078100 Sobic006G266700--Sobic002G078100 Sobic005G120700 Sobic005G120700 Sobic006G266700--Sobic005G120700 Sobic001G039300 Sobic001G039300 Sobic006G266700--Sobic001G039300 Sobic006G265600 Sobic006G265600 Sobic006G266700--Sobic006G265600 Sobic002G043000 Sobic002G043000 Sobic006G266700--Sobic002G043000 Sobic001G211500 Sobic001G211500 Sobic006G266700--Sobic001G211500 Sobic004G277400 Sobic004G277400 Sobic006G266700--Sobic004G277400 Sobic003G321600--Sobic006G266700 Sobic003G360300 Sobic003G360300 Sobic003G321600--Sobic003G360300 Sobic003G321600--Sobic007G209600 Sobic001G210000 Sobic001G210000 Sobic003G321600--Sobic001G210000 Sobic001G203500 Sobic001G203500 Sobic003G321600--Sobic001G203500 Sobic003G321600--Sobic005G120700 Sobic003G321600--Sobic001G039300 Sobic004G129500 Sobic004G129500 Sobic003G321600--Sobic004G129500 Sobic001G191900 Sobic001G191900 Sobic003G321600--Sobic001G191900 Sobic007G209600--Sobic001G211500 Sobic004G287100 Sobic004G287100 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic003G212600 Sobic003G212600 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic007G209600--Sobic001G210000 Sobic004G343200 Sobic004G343200 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic002G066800 Sobic002G066800 Sobic002G078100--Sobic002G066800 Sobic002G426100 Sobic002G426100 Sobic002G078100--Sobic002G426100 Sobic009G120400 Sobic009G120400 Sobic002G078100--Sobic009G120400 Sobic008G047500 Sobic008G047500 Sobic002G078100--Sobic008G047500 Sobic006G191200 Sobic006G191200 Sobic002G078100--Sobic006G191200 Sobic001G051400 Sobic001G051400 Sobic002G078100--Sobic001G051400 Sobic008G111600 Sobic008G111600 Sobic002G078100--Sobic008G111600 Sobic003G194800 Sobic003G194800 Sobic002G078100--Sobic003G194800 Sobic007G034200 Sobic007G034200 Sobic002G078100--Sobic007G034200 Sobic010G269300 Sobic010G269300 Sobic005G120700--Sobic010G269300 Sobic002G430900 Sobic002G430900 Sobic005G120700--Sobic002G430900 Sobic005G120700--Sobic004G287100 Sobic002G017900 Sobic002G017900 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic005G120700--Sobic003G360300 Sobic006G245700 Sobic006G245700 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic009G105400 Sobic009G105400 Sobic001G039300--Sobic009G105400 Sobic004G031300 Sobic004G031300 Sobic001G039300--Sobic004G031300 Sobic001G039300--Sobic005G120700 Sobic001G024000 Sobic001G024000 Sobic001G039300--Sobic001G024000 Sobic006G059500 Sobic006G059500 Sobic001G039300--Sobic006G059500 Sobic006G140400 Sobic006G140400 Sobic001G039300--Sobic006G140400 Sobic001G039300--Sobic010G269300 Sobic010G172400 Sobic010G172400 Sobic001G039300--Sobic010G172400 Sobic009G032200 Sobic009G032200 Sobic001G039300--Sobic009G032200 Sobic003G397900 Sobic003G397900 Sobic006G265600--Sobic003G397900 Sobic001G474400 Sobic001G474400 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic002G043000--Sobic008G111600 Sobic004G215900 Sobic004G215900 Sobic002G043000--Sobic004G215900 Sobic002G043000--Sobic002G426100 Sobic006G236000 Sobic006G236000 Sobic002G043000--Sobic006G236000 Sobic008G068100 Sobic008G068100 Sobic002G043000--Sobic008G068100 Sobic006G181800 Sobic006G181800 Sobic002G043000--Sobic006G181800 Sobic004G038100 Sobic004G038100 Sobic002G043000--Sobic004G038100 Sobic006G280100 Sobic006G280100 Sobic002G043000--Sobic006G280100 Sobic002G043000--Sobic004G129500 Sobic006G106200 Sobic006G106200 Sobic001G211500--Sobic006G106200 Sobic001G211500--Sobic007G209600 Sobic007G031300 Sobic007G031300 Sobic001G211500--Sobic007G031300 Sobic009G052100 Sobic009G052100 Sobic001G211500--Sobic009G052100 Sobic003G411700 Sobic003G411700 Sobic001G211500--Sobic003G411700 Sobic008G169400 Sobic008G169400 Sobic001G211500--Sobic008G169400 Sobic007G076200 Sobic007G076200 Sobic001G211500--Sobic007G076200 Sobic002G271400 Sobic002G271400 Sobic001G211500--Sobic002G271400 Sobic010G024000 Sobic010G024000 Sobic001G211500--Sobic010G024000 Sobic004G151200 Sobic004G151200 Sobic004G277400--Sobic004G151200 Sobic004G277400--Sobic006G265600 Sobic005G114500 Sobic005G114500 Sobic004G277400--Sobic005G114500 Sobic004G277400--Sobic001G191900 Sobic004G277400--Sobic003G360300 Sobic007G051400 Sobic007G051400 Sobic004G277400--Sobic007G051400 Sobic004G277400--Sobic003G222700 Sobic004G277400--Sobic003G005900 Sobic004G277400--Sobic001G151600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.