Gene annotation
Transcriptome id Sobic.003G321600.1
Synonym Sb03g036830
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XMC5
Pfam PF01535 PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF304
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69290 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g57900.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027240 , Zm00025a015479
Brachypodium KQK10131
Barley HORVU3Hr1G077700.1 , HORVU3Hr1G077700.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G266700 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
2 Sobic.003G360300 exostosin family domain containing protein, expressed -
3 Sobic.007G209600 ENT domain containing protein, expressed -
4 Sobic.001G210000 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
5 Sobic.001G203500 pentatricopeptide, putative, expressed -
6 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
7 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
8 Sobic.004G129500 expressed protein -
9 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
10 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
11 Sobic.010G227000 pentatricopeptide, putative, expressed -
12 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
13 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
14 Sobic.007G047600 expressed protein -
15 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
16 Sobic.001G436600 pentatricopeptide, putative, expressed -
17 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
18 Sobic.003G299500 expressed protein -
19 Sobic.004G343200 dehydrogenase, putative, expressed K00121: frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
20 Sobic.009G154900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ


Gene co-expression network
sample Sobic003G321600 Sobic003G321600 Sobic006G266700 Sobic006G266700 Sobic003G321600--Sobic006G266700 Sobic003G360300 Sobic003G360300 Sobic003G321600--Sobic003G360300 Sobic007G209600 Sobic007G209600 Sobic003G321600--Sobic007G209600 Sobic001G210000 Sobic001G210000 Sobic003G321600--Sobic001G210000 Sobic001G203500 Sobic001G203500 Sobic003G321600--Sobic001G203500 Sobic005G120700 Sobic005G120700 Sobic003G321600--Sobic005G120700 Sobic001G039300 Sobic001G039300 Sobic003G321600--Sobic001G039300 Sobic004G129500 Sobic004G129500 Sobic003G321600--Sobic004G129500 Sobic001G191900 Sobic001G191900 Sobic003G321600--Sobic001G191900 Sobic006G266700--Sobic003G321600 Sobic006G266700--Sobic007G209600 Sobic002G078100 Sobic002G078100 Sobic006G266700--Sobic002G078100 Sobic006G266700--Sobic005G120700 Sobic006G266700--Sobic001G039300 Sobic006G265600 Sobic006G265600 Sobic006G266700--Sobic006G265600 Sobic002G043000 Sobic002G043000 Sobic006G266700--Sobic002G043000 Sobic001G211500 Sobic001G211500 Sobic006G266700--Sobic001G211500 Sobic004G277400 Sobic004G277400 Sobic006G266700--Sobic004G277400 Sobic003G259600 Sobic003G259600 Sobic003G360300--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G360300--Sobic001G123600 Sobic010G269300 Sobic010G269300 Sobic003G360300--Sobic010G269300 Sobic007G047600 Sobic007G047600 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic002G142700 Sobic002G142700 Sobic003G360300--Sobic002G142700 Sobic004G342300 Sobic004G342300 Sobic003G360300--Sobic004G342300 Sobic003G360300--Sobic004G277400 Sobic008G080500 Sobic008G080500 Sobic003G360300--Sobic008G080500 Sobic007G209600--Sobic001G211500 Sobic004G287100 Sobic004G287100 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic003G212600 Sobic003G212600 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic007G209600--Sobic001G210000 Sobic004G343200 Sobic004G343200 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic001G006800 Sobic001G006800 Sobic001G210000--Sobic001G006800 Sobic001G210000--Sobic003G212600 Sobic007G031300 Sobic007G031300 Sobic001G210000--Sobic007G031300 Sobic009G087300 Sobic009G087300 Sobic001G210000--Sobic009G087300 Sobic001G210000--Sobic007G209600 Sobic009G049200 Sobic009G049200 Sobic001G210000--Sobic009G049200 Sobic006G242500 Sobic006G242500 Sobic001G210000--Sobic006G242500 Sobic001G210000--Sobic004G287100 Sobic005G163400 Sobic005G163400 Sobic001G210000--Sobic005G163400 Sobic003G431600 Sobic003G431600 Sobic001G203500--Sobic003G431600 Sobic004G157500 Sobic004G157500 Sobic001G203500--Sobic004G157500 Sobic004G064600 Sobic004G064600 Sobic001G203500--Sobic004G064600 Sobic004G354100 Sobic004G354100 Sobic001G203500--Sobic004G354100 Sobic001G203500--Sobic006G265600 Sobic002G426100 Sobic002G426100 Sobic001G203500--Sobic002G426100 Sobic009G260700 Sobic009G260700 Sobic001G203500--Sobic009G260700 Sobic001G203500--Sobic001G191900 Sobic003G135500 Sobic003G135500 Sobic001G203500--Sobic003G135500 Sobic005G120700--Sobic010G269300 Sobic002G430900 Sobic002G430900 Sobic005G120700--Sobic002G430900 Sobic005G120700--Sobic004G287100 Sobic002G017900 Sobic002G017900 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic005G120700--Sobic003G360300 Sobic006G245700 Sobic006G245700 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic009G105400 Sobic009G105400 Sobic001G039300--Sobic009G105400 Sobic004G031300 Sobic004G031300 Sobic001G039300--Sobic004G031300 Sobic001G039300--Sobic005G120700 Sobic001G024000 Sobic001G024000 Sobic001G039300--Sobic001G024000 Sobic006G059500 Sobic006G059500 Sobic001G039300--Sobic006G059500 Sobic006G140400 Sobic006G140400 Sobic001G039300--Sobic006G140400 Sobic001G039300--Sobic010G269300 Sobic010G172400 Sobic010G172400 Sobic001G039300--Sobic010G172400 Sobic009G032200 Sobic009G032200 Sobic001G039300--Sobic009G032200 Sobic007G036800 Sobic007G036800 Sobic004G129500--Sobic007G036800 Sobic010G103500 Sobic010G103500 Sobic004G129500--Sobic010G103500 Sobic001G296800 Sobic001G296800 Sobic004G129500--Sobic001G296800 Sobic003G028400 Sobic003G028400 Sobic004G129500--Sobic003G028400 Sobic003G411700 Sobic003G411700 Sobic004G129500--Sobic003G411700 Sobic004G129500--Sobic002G426100 Sobic002G123600 Sobic002G123600 Sobic004G129500--Sobic002G123600 Sobic004G129500--Sobic002G043000 Sobic001G361200 Sobic001G361200 Sobic004G129500--Sobic001G361200 Sobic006G106600 Sobic006G106600 Sobic001G191900--Sobic006G106600 Sobic001G229300 Sobic001G229300 Sobic001G191900--Sobic001G229300 Sobic001G191900--Sobic004G277400 Sobic002G153400 Sobic002G153400 Sobic001G191900--Sobic002G153400 Sobic007G022700 Sobic007G022700 Sobic001G191900--Sobic007G022700 Sobic007G051400 Sobic007G051400 Sobic001G191900--Sobic007G051400 Sobic009G120400 Sobic009G120400 Sobic001G191900--Sobic009G120400 Sobic001G191900--Sobic004G354100 Sobic001G191900--Sobic002G426100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.