Gene annotation
Transcriptome id Sobic.004G343200.1
Synonym PAR2, ATGSNOR1, ADH2, HOT5, Sb04g037050, GSNOR
Functional annotation dehydrogenase, putative, expressed
UniProt C5XVU9
Pfam PF08240 PF00107
Panther DB PTHR11695 PTHR11695:SF269
NCBI CDD -
KEGG Orthology K00121; frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G43940 : GroES-like zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os02g57040.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a022590
Brachypodium KQK01333
Barley HORVU6Hr1G090260.5 , HORVU6Hr1G090260.4 , HORVU6Hr1G090260.6 , HORVU6Hr1G090260.1 , HORVU6Hr1G090260.3 , HORVU6Hr1G090260.2
Wheat TraesCS6D02G371200 , TraesCS6B02G425700 , TraesCS6A02G386600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G343200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
2 Sobic.003G311500 double-stranded RNA binding motif containing protein, expressed -
3 Sobic.003G360300 exostosin family domain containing protein, expressed -
4 Sobic.007G209600 ENT domain containing protein, expressed -
5 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
6 Sobic.006G255900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
7 Sobic.001G229300 expressed protein -
8 Sobic.004G342300 expressed protein -
9 Sobic.009G176700 expressed protein -
10 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
11 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
12 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
13 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
14 Sobic.002G430900 PWWP domain containing protein, expressed -
15 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
16 Sobic.001G537400 MYB family transcription factor, putative, expressed -
17 Sobic.001G210000 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
18 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
19 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
20 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase


Gene co-expression network
sample Sobic004G343200 Sobic004G343200 Sobic007G051400 Sobic007G051400 Sobic004G343200--Sobic007G051400 Sobic003G311500 Sobic003G311500 Sobic004G343200--Sobic003G311500 Sobic003G360300 Sobic003G360300 Sobic004G343200--Sobic003G360300 Sobic007G209600 Sobic007G209600 Sobic004G343200--Sobic007G209600 Sobic001G488100 Sobic001G488100 Sobic004G343200--Sobic001G488100 Sobic006G255900 Sobic006G255900 Sobic004G343200--Sobic006G255900 Sobic001G229300 Sobic001G229300 Sobic004G343200--Sobic001G229300 Sobic004G342300 Sobic004G342300 Sobic004G343200--Sobic004G342300 Sobic009G176700 Sobic009G176700 Sobic004G343200--Sobic009G176700 Sobic002G142700 Sobic002G142700 Sobic007G051400--Sobic002G142700 Sobic004G277400 Sobic004G277400 Sobic007G051400--Sobic004G277400 Sobic007G051400--Sobic004G343200 Sobic004G129500 Sobic004G129500 Sobic007G051400--Sobic004G129500 Sobic001G191900 Sobic001G191900 Sobic007G051400--Sobic001G191900 Sobic002G426100 Sobic002G426100 Sobic007G051400--Sobic002G426100 Sobic010G172400 Sobic010G172400 Sobic007G051400--Sobic010G172400 Sobic004G256300 Sobic004G256300 Sobic007G051400--Sobic004G256300 Sobic001G507200 Sobic001G507200 Sobic007G051400--Sobic001G507200 Sobic003G311500--Sobic004G343200 Sobic003G311500--Sobic007G209600 Sobic008G015200 Sobic008G015200 Sobic003G311500--Sobic008G015200 Sobic007G087800 Sobic007G087800 Sobic003G311500--Sobic007G087800 Sobic007G159200 Sobic007G159200 Sobic003G311500--Sobic007G159200 Sobic002G219900 Sobic002G219900 Sobic003G311500--Sobic002G219900 Sobic006G188800 Sobic006G188800 Sobic003G311500--Sobic006G188800 Sobic003G009200 Sobic003G009200 Sobic003G311500--Sobic003G009200 Sobic002G430900 Sobic002G430900 Sobic003G311500--Sobic002G430900 Sobic003G259600 Sobic003G259600 Sobic003G360300--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G360300--Sobic001G123600 Sobic010G269300 Sobic010G269300 Sobic003G360300--Sobic010G269300 Sobic007G047600 Sobic007G047600 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic003G360300--Sobic002G142700 Sobic003G360300--Sobic004G342300 Sobic003G360300--Sobic004G277400 Sobic008G080500 Sobic008G080500 Sobic003G360300--Sobic008G080500 Sobic001G211500 Sobic001G211500 Sobic007G209600--Sobic001G211500 Sobic004G287100 Sobic004G287100 Sobic007G209600--Sobic004G287100 Sobic007G209600--Sobic002G219900 Sobic003G212600 Sobic003G212600 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic007G209600--Sobic003G311500 Sobic001G210000 Sobic001G210000 Sobic007G209600--Sobic001G210000 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic004G315500 Sobic004G315500 Sobic001G488100--Sobic004G315500 Sobic006G137700 Sobic006G137700 Sobic001G488100--Sobic006G137700 Sobic002G405500 Sobic002G405500 Sobic001G488100--Sobic002G405500 Sobic009G234700 Sobic009G234700 Sobic001G488100--Sobic009G234700 Sobic010G188000 Sobic010G188000 Sobic001G488100--Sobic010G188000 Sobic006G002800 Sobic006G002800 Sobic001G488100--Sobic006G002800 Sobic001G373000 Sobic001G373000 Sobic001G488100--Sobic001G373000 Sobic009G134900 Sobic009G134900 Sobic001G488100--Sobic009G134900 Sobic008G160000 Sobic008G160000 Sobic001G488100--Sobic008G160000 Sobic006G255900--Sobic004G343200 Sobic006G255900--Sobic001G229300 Sobic006G255900--Sobic004G277400 Sobic006G106600 Sobic006G106600 Sobic006G255900--Sobic006G106600 Sobic001G034000 Sobic001G034000 Sobic006G255900--Sobic001G034000 Sobic006G255900--Sobic001G488100 Sobic009G254100 Sobic009G254100 Sobic006G255900--Sobic009G254100 Sobic006G255900--Sobic007G051400 Sobic002G011100 Sobic002G011100 Sobic006G255900--Sobic002G011100 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic003G222700 Sobic003G222700 Sobic001G229300--Sobic003G222700 Sobic001G229300--Sobic002G142700 Sobic001G229300--Sobic006G106600 Sobic004G354000 Sobic004G354000 Sobic004G342300--Sobic004G354000 Sobic004G038100 Sobic004G038100 Sobic004G342300--Sobic004G038100 Sobic004G342300--Sobic003G360300 Sobic004G342300--Sobic008G080500 Sobic010G032300 Sobic010G032300 Sobic004G342300--Sobic010G032300 Sobic006G208400 Sobic006G208400 Sobic004G342300--Sobic006G208400 Sobic010G262100 Sobic010G262100 Sobic004G342300--Sobic010G262100 Sobic006G181800 Sobic006G181800 Sobic004G342300--Sobic006G181800 Sobic004G342300--Sobic003G259600 Sobic009G176700--Sobic002G405500 Sobic003G039000 Sobic003G039000 Sobic009G176700--Sobic003G039000 Sobic009G003700 Sobic009G003700 Sobic009G176700--Sobic009G003700 Sobic008G092800 Sobic008G092800 Sobic009G176700--Sobic008G092800 Sobic001G467100 Sobic001G467100 Sobic009G176700--Sobic001G467100 Sobic006G056200 Sobic006G056200 Sobic009G176700--Sobic006G056200 Sobic009G176700--Sobic001G488100 Sobic001G143600 Sobic001G143600 Sobic009G176700--Sobic001G143600 Sobic001G536000 Sobic001G536000 Sobic009G176700--Sobic001G536000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.