Gene annotation
Transcriptome id Sobic.001G061800.1,Sobic.001G061800.2
Synonym EMB251, RFC3, EMB2775, Sb01g005600, EMB161
Functional annotation RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed
UniProt A0A1B6QHK6 , A0A1B6QHJ2
Pfam PF13177 PF08542
Panther DB PTHR11669 PTHR11669:SF1
NCBI CDD KOG2035; Replication factor C, subunit RFC3
KEGG Orthology K10756; replication factor C subunit 3/5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27740 : ATPase family associated with various cellular activities (AAA)
RAP-DB (Rice) LOC_Os03g57870.1 : RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed
MaizeGDB (Corn) Zm00025a016594 , Zm00025a008514
Brachypodium KQK12800 , KQK12801
Barley HORVU5Hr1G104200.2 , HORVU5Hr1G104200.3 , HORVU5Hr1G104200.1 , HORVU5Hr1G104200.6 , HORVU5Hr1G104200.7 , HORVU5Hr1G104200.4 , HORVU5Hr1G104200.5 , HORVU5Hr1G104200.8
Wheat TraesCS5B02G431500 , TraesCS5D02G437600 , TraesCS5A02G429500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
3 Sobic.005G088900 AGAP007117-PA, putative, expressed -
4 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
5 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
6 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
7 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
8 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
9 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
10 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
11 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
12 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
13 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
14 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
15 Sobic.006G059500 expressed protein K13150: COIL, coilin
16 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
17 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
18 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
19 Sobic.004G343200 dehydrogenase, putative, expressed K00121: frmA, ADH5, S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
20 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5


Gene co-expression network
sample Sobic001G061800 Sobic001G061800 Sobic001G408300 Sobic001G408300 Sobic001G061800--Sobic001G408300 Sobic003G223500 Sobic003G223500 Sobic001G061800--Sobic003G223500 Sobic005G088900 Sobic005G088900 Sobic001G061800--Sobic005G088900 Sobic001G024000 Sobic001G024000 Sobic001G061800--Sobic001G024000 Sobic005G028100 Sobic005G028100 Sobic001G061800--Sobic005G028100 Sobic004G047200 Sobic004G047200 Sobic001G061800--Sobic004G047200 Sobic008G009600 Sobic008G009600 Sobic001G061800--Sobic008G009600 Sobic006G251600 Sobic006G251600 Sobic001G061800--Sobic006G251600 Sobic004G287100 Sobic004G287100 Sobic001G061800--Sobic004G287100 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic010G038800 Sobic010G038800 Sobic001G408300--Sobic010G038800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700 Sobic003G223500--Sobic001G061800 Sobic005G178700 Sobic005G178700 Sobic003G223500--Sobic005G178700 Sobic004G011000 Sobic004G011000 Sobic003G223500--Sobic004G011000 Sobic001G226000 Sobic001G226000 Sobic003G223500--Sobic001G226000 Sobic001G168100 Sobic001G168100 Sobic003G223500--Sobic001G168100 Sobic002G334600 Sobic002G334600 Sobic003G223500--Sobic002G334600 Sobic007G043400 Sobic007G043400 Sobic003G223500--Sobic007G043400 Sobic007G053400 Sobic007G053400 Sobic003G223500--Sobic007G053400 Sobic002G218700 Sobic002G218700 Sobic003G223500--Sobic002G218700 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic001G024000--Sobic004G215900 Sobic010G205900 Sobic010G205900 Sobic001G024000--Sobic010G205900 Sobic008G111600 Sobic008G111600 Sobic001G024000--Sobic008G111600 Sobic009G246500 Sobic009G246500 Sobic001G024000--Sobic009G246500 Sobic001G024000--Sobic008G068100 Sobic003G412000 Sobic003G412000 Sobic001G024000--Sobic003G412000 Sobic008G049100 Sobic008G049100 Sobic001G024000--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic001G024000--Sobic003G123200 Sobic001G024000--Sobic002G003300 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic004G326600 Sobic004G326600 Sobic004G047200--Sobic004G326600 Sobic002G423500 Sobic002G423500 Sobic004G047200--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic004G047200--Sobic002G014400 Sobic001G008500 Sobic001G008500 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic001G371100 Sobic001G371100 Sobic004G047200--Sobic001G371100 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic010G073200 Sobic010G073200 Sobic008G009600--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic006G226300 Sobic006G226300 Sobic008G009600--Sobic006G226300 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic007G209600 Sobic007G209600 Sobic004G287100--Sobic007G209600 Sobic005G120700 Sobic005G120700 Sobic004G287100--Sobic005G120700 Sobic004G287100--Sobic001G061800 Sobic001G033000 Sobic001G033000 Sobic004G287100--Sobic001G033000 Sobic002G318600 Sobic002G318600 Sobic004G287100--Sobic002G318600 Sobic001G210000 Sobic001G210000 Sobic004G287100--Sobic001G210000 Sobic002G430900 Sobic002G430900 Sobic004G287100--Sobic002G430900 Sobic004G287100--Sobic010G250800 Sobic001G122100 Sobic001G122100 Sobic004G287100--Sobic001G122100
Octagon: transcription factors


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