Gene annotation
Transcriptome id Sobic.003G123100.1
Synonym Sb03g010430
Functional annotation expressed protein
UniProt C5XGJ0
Pfam PF12862
Panther DB PTHR12830:SF9 PTHR12830
NCBI CDD -
KEGG Orthology K03352; anaphase-promoting complex subunit 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G06590 : -
RAP-DB (Rice) LOC_Os12g43120.1 : expressed protein
MaizeGDB (Corn) Zm00025a034211 , Zm00025a024015
Brachypodium KQJ85698
Barley HORVU5Hr1G005770.14 , HORVU5Hr1G005770.15 , HORVU5Hr1G005770.16 , HORVU5Hr1G005770.10 , HORVU5Hr1G005770.11 , HORVU5Hr1G005770.12 , HORVU5Hr1G005770.13 , HORVU5Hr1G005770.6 , HORVU5Hr1G005770.7 , HORVU5Hr1G005770.4 , HORVU5Hr1G005770.5 , HORVU5Hr1G005770.2 , HORVU5Hr1G005770.3 , HORVU5Hr1G005770.1 , HORVU5Hr1G005770.8 , HORVU5Hr1G005770.9
Wheat TraesCS5B02G017800 , TraesCS5D02G025900 , TraesCS5A02G020800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
2 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
3 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
4 Sobic.010G262100 expressed protein -
5 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
6 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
7 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
8 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
9 Sobic.006G112700 ATPOT1, putative, expressed -
10 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
11 Sobic.006G125500 expressed protein -
12 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
13 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
14 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
15 Sobic.004G224600 expressed protein -
16 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
17 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
18 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
19 Sobic.004G085000 expressed protein K14310: NUP205, nuclear pore complex protein Nup205
20 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6


Gene co-expression network
sample Sobic003G123100 Sobic003G123100 Sobic007G014800 Sobic007G014800 Sobic003G123100--Sobic007G014800 Sobic006G236000 Sobic006G236000 Sobic003G123100--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic003G123100--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic003G123100--Sobic010G262100 Sobic001G239800 Sobic001G239800 Sobic003G123100--Sobic001G239800 Sobic001G451300 Sobic001G451300 Sobic003G123100--Sobic001G451300 Sobic002G252100 Sobic002G252100 Sobic003G123100--Sobic002G252100 Sobic005G010900 Sobic005G010900 Sobic003G123100--Sobic005G010900 Sobic006G112700 Sobic006G112700 Sobic003G123100--Sobic006G112700 Sobic007G014800--Sobic003G123100 Sobic007G014800--Sobic009G142000 Sobic004G086200 Sobic004G086200 Sobic007G014800--Sobic004G086200 Sobic002G112600 Sobic002G112600 Sobic007G014800--Sobic002G112600 Sobic001G346900 Sobic001G346900 Sobic007G014800--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic007G014800--Sobic004G285000 Sobic004G215900 Sobic004G215900 Sobic007G014800--Sobic004G215900 Sobic006G226300 Sobic006G226300 Sobic007G014800--Sobic006G226300 Sobic008G163500 Sobic008G163500 Sobic007G014800--Sobic008G163500 Sobic006G236000--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic006G236000--Sobic008G068100 Sobic006G236000--Sobic003G123100 Sobic002G043000 Sobic002G043000 Sobic006G236000--Sobic002G043000 Sobic006G236000--Sobic006G112700 Sobic006G181800 Sobic006G181800 Sobic006G236000--Sobic006G181800 Sobic009G191500 Sobic009G191500 Sobic006G236000--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic006G236000--Sobic002G003300 Sobic008G111600 Sobic008G111600 Sobic006G236000--Sobic008G111600 Sobic003G294600 Sobic003G294600 Sobic009G142000--Sobic003G294600 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic001G453000 Sobic001G453000 Sobic009G142000--Sobic001G453000 Sobic009G142000--Sobic003G123100 Sobic008G132000 Sobic008G132000 Sobic009G142000--Sobic008G132000 Sobic005G200900 Sobic005G200900 Sobic009G142000--Sobic005G200900 Sobic001G536000 Sobic001G536000 Sobic009G142000--Sobic001G536000 Sobic010G262100--Sobic001G451300 Sobic010G138900 Sobic010G138900 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic002G043100 Sobic002G043100 Sobic010G262100--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic010G262100--Sobic002G399800 Sobic002G371600 Sobic002G371600 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800 Sobic001G239800--Sobic006G112700 Sobic001G239800--Sobic003G123100 Sobic002G318800 Sobic002G318800 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G239800--Sobic001G536000 Sobic001G239800--Sobic002G252100 Sobic001G239800--Sobic007G014800 Sobic006G125900 Sobic006G125900 Sobic001G239800--Sobic006G125900 Sobic004G315500 Sobic004G315500 Sobic001G239800--Sobic004G315500 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic003G309050 Sobic003G309050 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic001G451300--Sobic002G371600 Sobic001G451300--Sobic009G142000 Sobic001G451300--Sobic002G399800 Sobic006G245900 Sobic006G245900 Sobic002G252100--Sobic006G245900 Sobic002G252100--Sobic003G123100 Sobic002G252100--Sobic001G239800 Sobic002G252100--Sobic001G346900 Sobic002G252100--Sobic002G371600 Sobic006G270600 Sobic006G270600 Sobic002G252100--Sobic006G270600 Sobic001G098400 Sobic001G098400 Sobic002G252100--Sobic001G098400 Sobic002G252100--Sobic004G315500 Sobic002G252100--Sobic007G014800 Sobic005G010900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic005G010900--Sobic001G373800 Sobic010G114900 Sobic010G114900 Sobic005G010900--Sobic010G114900 Sobic005G010900--Sobic004G315500 Sobic003G199300 Sobic003G199300 Sobic005G010900--Sobic003G199300 Sobic005G010900--Sobic002G371600 Sobic008G049100 Sobic008G049100 Sobic005G010900--Sobic008G049100 Sobic006G125500 Sobic006G125500 Sobic005G010900--Sobic006G125500 Sobic005G010900--Sobic003G123100 Sobic006G112700--Sobic008G080500 Sobic003G209400 Sobic003G209400 Sobic006G112700--Sobic003G209400 Sobic006G112700--Sobic001G239800 Sobic006G112700--Sobic006G236000 Sobic006G112700--Sobic009G142000 Sobic006G112700--Sobic010G262100 Sobic006G112700--Sobic003G123100 Sobic006G112700--Sobic008G092800 Sobic006G112700--Sobic001G451300
Octagon: transcription factors


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