Gene annotation
Transcriptome id Sobic.002G252100.1
Synonym Sb02g028780, ATMBD2, MBD2, MBD02
Functional annotation methyl-binding domain protein MBD, putative, expressed
UniProt A0A1B6QDD9
Pfam PF01429 PF07496
Panther DB PTHR12396
NCBI CDD KOG4161; Methyl-CpG binding transcription regulators
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G35330 : methyl-CPG-binding domain protein 02
RAP-DB (Rice) LOC_Os09g32090.1 : methyl-binding domain protein MBD, putative, expressed
MaizeGDB (Corn) Zm00025a014236 , Zm00025a047494
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G252100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G245900 FAR1 family protein, expressed -
2 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
3 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
4 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
5 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
6 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
7 Sobic.001G098400 expressed protein K16278: E3 ubiquitin-protein ligase HOS1
8 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
9 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
10 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
11 Sobic.004G040200 CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
12 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
13 Sobic.007G047600 expressed protein -
14 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
15 Sobic.007G102500 - -
16 Sobic.002G361400 frigida, putative, expressed -
17 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
18 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
19 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.004G224600 expressed protein -


Gene co-expression network
sample Sobic002G252100 Sobic002G252100 Sobic006G245900 Sobic006G245900 Sobic002G252100--Sobic006G245900 Sobic003G123100 Sobic003G123100 Sobic002G252100--Sobic003G123100 Sobic001G239800 Sobic001G239800 Sobic002G252100--Sobic001G239800 Sobic001G346900 Sobic001G346900 Sobic002G252100--Sobic001G346900 Sobic002G371600 Sobic002G371600 Sobic002G252100--Sobic002G371600 Sobic006G270600 Sobic006G270600 Sobic002G252100--Sobic006G270600 Sobic001G098400 Sobic001G098400 Sobic002G252100--Sobic001G098400 Sobic004G315500 Sobic004G315500 Sobic002G252100--Sobic004G315500 Sobic007G014800 Sobic007G014800 Sobic002G252100--Sobic007G014800 Sobic006G245900--Sobic002G371600 Sobic002G296400 Sobic002G296400 Sobic006G245900--Sobic002G296400 Sobic004G031300 Sobic004G031300 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic006G245900--Sobic002G252100 Sobic003G308500 Sobic003G308500 Sobic006G245900--Sobic003G308500 Sobic006G245900--Sobic001G346900 Sobic003G123100--Sobic007G014800 Sobic006G236000 Sobic006G236000 Sobic003G123100--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic003G123100--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic003G123100--Sobic010G262100 Sobic003G123100--Sobic001G239800 Sobic001G451300 Sobic001G451300 Sobic003G123100--Sobic001G451300 Sobic003G123100--Sobic002G252100 Sobic005G010900 Sobic005G010900 Sobic003G123100--Sobic005G010900 Sobic006G112700 Sobic006G112700 Sobic003G123100--Sobic006G112700 Sobic001G239800--Sobic006G112700 Sobic001G239800--Sobic003G123100 Sobic002G318800 Sobic002G318800 Sobic001G239800--Sobic002G318800 Sobic003G330900 Sobic003G330900 Sobic001G239800--Sobic003G330900 Sobic001G536000 Sobic001G536000 Sobic001G239800--Sobic001G536000 Sobic001G239800--Sobic002G252100 Sobic001G239800--Sobic007G014800 Sobic006G125900 Sobic006G125900 Sobic001G239800--Sobic006G125900 Sobic001G239800--Sobic004G315500 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic002G371600--Sobic010G262100 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic003G132000 Sobic003G132000 Sobic006G270600--Sobic003G132000 Sobic001G259000 Sobic001G259000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic001G114500 Sobic001G114500 Sobic006G270600--Sobic001G114500 Sobic001G098400--Sobic003G308500 Sobic006G125500 Sobic006G125500 Sobic001G098400--Sobic006G125500 Sobic001G098400--Sobic002G252100 Sobic001G098400--Sobic002G371600 Sobic001G098400--Sobic001G346900 Sobic003G309050 Sobic003G309050 Sobic001G098400--Sobic003G309050 Sobic001G004100 Sobic001G004100 Sobic001G098400--Sobic001G004100 Sobic004G006600 Sobic004G006600 Sobic001G098400--Sobic004G006600 Sobic003G433300 Sobic003G433300 Sobic001G098400--Sobic003G433300 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic004G315500--Sobic005G010900 Sobic001G373000 Sobic001G373000 Sobic004G315500--Sobic001G373000 Sobic010G188000 Sobic010G188000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic004G315500--Sobic003G123100 Sobic007G014800--Sobic003G123100 Sobic007G014800--Sobic009G142000 Sobic007G014800--Sobic004G086200 Sobic002G112600 Sobic002G112600 Sobic007G014800--Sobic002G112600 Sobic007G014800--Sobic001G346900 Sobic007G014800--Sobic004G285000 Sobic004G215900 Sobic004G215900 Sobic007G014800--Sobic004G215900 Sobic006G226300 Sobic006G226300 Sobic007G014800--Sobic006G226300 Sobic008G163500 Sobic008G163500 Sobic007G014800--Sobic008G163500
Octagon: transcription factors


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