Gene annotation
Transcriptome id Sobic.004G040200.1,Sobic.004G040200.2
Synonym Sb04g003480, ATMPK1, MPK1
Functional annotation CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
UniProt C5XUN0
Pfam PF06293
Panther DB PTHR24055:SF216 PTHR24055
NCBI CDD -
KEGG Orthology K04371; ERK, mitogen-activated protein kinase 1/3
Gene Ontology GO:0005524; ATP binding GO:0016020membrane GO:0016773phosphotransferase activity, alcohol group as acceptor


Orthologs (automatic annotation)
TAIR AT1G10210 : mitogen-activated protein kinase 1
RAP-DB (Rice) LOC_Os02g05480.1,LOC_Os02g05480.2 : CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
MaizeGDB (Corn) Zm00025a047005 , Zm00025a018990
Brachypodium KQJ89331 , KQJ89330 , KQJ89291 , KQJ93308 , KQK17371
Barley HORVU7Hr1G097740.2 , HORVU7Hr1G097740.3 , HORVU7Hr1G097740.1 , HORVU6Hr1G021480.1 , HORVU6Hr1G021480.2 , HORVU4Hr1G049430.1
Wheat TraesCS6A02G118100 , TraesCS6A02G118100 , TraesCS6B02G146300 , TraesCS6B02G146300 , TraesCS6D02G108100
Populus -


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cDNA sequences
Sobic.004G040200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G332400 neurochondrin family protein, putative, expressed -
2 Sobic.006G040800 expressed protein -
3 Sobic.002G048700 BT1 family protein, putative, expressed -
4 Sobic.008G002500 RCD1, putative, expressed -
5 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
6 Sobic.002G361400 frigida, putative, expressed -
7 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
8 Sobic.001G051700 expressed protein -
9 Sobic.004G123400 MYB family transcription factor, putative, expressed K09420: MYB, transcriptional activator Myb
10 Sobic.003G296900 expressed protein -
11 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
12 Sobic.004G185800 expressed protein -
13 Sobic.003G416700 homeobox domain containing protein, expressed -
14 Sobic.006G245900 FAR1 family protein, expressed -
15 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
16 Sobic.001G286500 expressed protein -
17 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
18 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
19 Sobic.004G356800 OsRR3 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
20 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein


Gene co-expression network
sample Sobic004G040200 Sobic004G040200 Sobic004G332400 Sobic004G332400 Sobic004G040200--Sobic004G332400 Sobic006G040800 Sobic006G040800 Sobic004G040200--Sobic006G040800 Sobic002G048700 Sobic002G048700 Sobic004G040200--Sobic002G048700 Sobic008G002500 Sobic008G002500 Sobic004G040200--Sobic008G002500 Sobic009G255600 Sobic009G255600 Sobic004G040200--Sobic009G255600 Sobic002G361400 Sobic002G361400 Sobic004G040200--Sobic002G361400 Sobic007G225100 Sobic007G225100 Sobic004G040200--Sobic007G225100 Sobic001G051700 Sobic001G051700 Sobic004G040200--Sobic001G051700 Sobic004G123400 Sobic004G123400 Sobic004G040200--Sobic004G123400 Sobic004G332400--Sobic006G040800 Sobic004G332400--Sobic008G002500 Sobic004G321700 Sobic004G321700 Sobic004G332400--Sobic004G321700 Sobic009G143800 Sobic009G143800 Sobic004G332400--Sobic009G143800 Sobic003G188400 Sobic003G188400 Sobic004G332400--Sobic003G188400 Sobic002G425500 Sobic002G425500 Sobic004G332400--Sobic002G425500 Sobic001G346900 Sobic001G346900 Sobic004G332400--Sobic001G346900 Sobic008G147200 Sobic008G147200 Sobic004G332400--Sobic008G147200 Sobic004G332400--Sobic004G040200 Sobic006G040800--Sobic008G002500 Sobic001G063700 Sobic001G063700 Sobic006G040800--Sobic001G063700 Sobic006G040800--Sobic004G332400 Sobic009G088000 Sobic009G088000 Sobic006G040800--Sobic009G088000 Sobic003G360400 Sobic003G360400 Sobic006G040800--Sobic003G360400 Sobic008G164600 Sobic008G164600 Sobic006G040800--Sobic008G164600 Sobic001G354600 Sobic001G354600 Sobic006G040800--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic006G040800--Sobic001G433800 Sobic006G040800--Sobic007G225100 Sobic006G261400 Sobic006G261400 Sobic002G048700--Sobic006G261400 Sobic006G267600 Sobic006G267600 Sobic002G048700--Sobic006G267600 Sobic002G048700--Sobic001G051700 Sobic003G416700 Sobic003G416700 Sobic002G048700--Sobic003G416700 Sobic002G048700--Sobic004G040200 Sobic002G048700--Sobic002G425500 Sobic001G111600 Sobic001G111600 Sobic002G048700--Sobic001G111600 Sobic007G183900 Sobic007G183900 Sobic002G048700--Sobic007G183900 Sobic002G048700--Sobic008G002500 Sobic008G002500--Sobic006G040800 Sobic008G002500--Sobic001G063700 Sobic008G002500--Sobic001G354600 Sobic008G002500--Sobic003G360400 Sobic008G002500--Sobic009G088000 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic008G002500--Sobic001G433800 Sobic008G002500--Sobic004G332400 Sobic010G186600 Sobic010G186600 Sobic009G255600--Sobic010G186600 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic009G255600--Sobic003G360400 Sobic008G153500 Sobic008G153500 Sobic002G361400--Sobic008G153500 Sobic002G361400--Sobic004G040200 Sobic003G121300 Sobic003G121300 Sobic002G361400--Sobic003G121300 Sobic002G111600 Sobic002G111600 Sobic002G361400--Sobic002G111600 Sobic002G361400--Sobic001G522600 Sobic004G356800 Sobic004G356800 Sobic002G361400--Sobic004G356800 Sobic002G371700 Sobic002G371700 Sobic002G361400--Sobic002G371700 Sobic009G095100 Sobic009G095100 Sobic002G361400--Sobic009G095100 Sobic008G103300 Sobic008G103300 Sobic002G361400--Sobic008G103300 Sobic004G277200 Sobic004G277200 Sobic007G225100--Sobic004G277200 Sobic001G313700 Sobic001G313700 Sobic007G225100--Sobic001G313700 Sobic002G299000 Sobic002G299000 Sobic007G225100--Sobic002G299000 Sobic003G337300 Sobic003G337300 Sobic007G225100--Sobic003G337300 Sobic002G366400 Sobic002G366400 Sobic007G225100--Sobic002G366400 Sobic003G104000 Sobic003G104000 Sobic007G225100--Sobic003G104000 Sobic008G099800 Sobic008G099800 Sobic007G225100--Sobic008G099800 Sobic001G124200 Sobic001G124200 Sobic007G225100--Sobic001G124200 Sobic002G045600 Sobic002G045600 Sobic007G225100--Sobic002G045600 Sobic001G051700--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G051700--Sobic002G145800 Sobic001G051700--Sobic006G267600 Sobic002G154000 Sobic002G154000 Sobic001G051700--Sobic002G154000 Sobic001G051700--Sobic006G261400 Sobic006G224800 Sobic006G224800 Sobic001G051700--Sobic006G224800 Sobic007G183300 Sobic007G183300 Sobic001G051700--Sobic007G183300 Sobic010G275500 Sobic010G275500 Sobic001G051700--Sobic010G275500 Sobic003G062300 Sobic003G062300 Sobic001G051700--Sobic003G062300 Sobic004G123400--Sobic004G040200 Sobic001G375600 Sobic001G375600 Sobic004G123400--Sobic001G375600 Sobic004G123400--Sobic004G277200 Sobic004G123400--Sobic007G225100 Sobic004G123400--Sobic004G332400 Sobic004G123400--Sobic008G002500 Sobic004G123400--Sobic006G040800 Sobic003G294600 Sobic003G294600 Sobic004G123400--Sobic003G294600 Sobic004G123400--Sobic002G111600
Octagon: transcription factors


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