Gene annotation
Transcriptome id Sobic.001G098400.1
Synonym HOS1
Functional annotation expressed protein
UniProt Q9XHF7 , A0A1B6QI71
Pfam PF13934
Panther DB PTHR10044 PTHR10044:SF129
NCBI CDD -
KEGG Orthology K16278; E3 ubiquitin-protein ligase HOS1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39810 : ubiquitin-protein ligases
RAP-DB (Rice) LOC_Os03g52700.1 : expressed protein
MaizeGDB (Corn) Zm00025a013721 , Zm00025a016855 , Zm00025a008053
Brachypodium KQK13330
Barley HORVU4Hr1G011260.1 , HORVU4Hr1G011260.2 , HORVU4Hr1G011260.3
Wheat TraesCS4D02G066700 , TraesCS4D02G066700 , TraesCS4B02G067700 , TraesCS4B02G067700 , TraesCS4B02G067700 , TraesCS4A02G247200 , TraesCS4A02G247200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G098400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
2 Sobic.006G125500 expressed protein -
3 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
4 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
5 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
6 Sobic.003G309050 - -
7 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
9 Sobic.003G433300 DNA mismatch repair protein Mlh1, putative, expressed K08734: DNA mismatch repair protein MLH1
10 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
11 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
12 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
13 Sobic.004G332400 neurochondrin family protein, putative, expressed -
14 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
15 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
16 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
17 Sobic.006G245900 FAR1 family protein, expressed -
18 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
20 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6


Gene co-expression network
sample Sobic001G098400 Sobic001G098400 Sobic003G308500 Sobic003G308500 Sobic001G098400--Sobic003G308500 Sobic006G125500 Sobic006G125500 Sobic001G098400--Sobic006G125500 Sobic002G252100 Sobic002G252100 Sobic001G098400--Sobic002G252100 Sobic002G371600 Sobic002G371600 Sobic001G098400--Sobic002G371600 Sobic001G346900 Sobic001G346900 Sobic001G098400--Sobic001G346900 Sobic003G309050 Sobic003G309050 Sobic001G098400--Sobic003G309050 Sobic001G004100 Sobic001G004100 Sobic001G098400--Sobic001G004100 Sobic004G006600 Sobic004G006600 Sobic001G098400--Sobic004G006600 Sobic003G433300 Sobic003G433300 Sobic001G098400--Sobic003G433300 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic006G125500--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G125500--Sobic004G224600 Sobic006G125500--Sobic006G002800 Sobic006G125500--Sobic003G146600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic007G155500 Sobic007G155500 Sobic006G125500--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic006G125500--Sobic005G010900 Sobic002G252100--Sobic006G245900 Sobic003G123100 Sobic003G123100 Sobic002G252100--Sobic003G123100 Sobic001G239800 Sobic001G239800 Sobic002G252100--Sobic001G239800 Sobic002G252100--Sobic001G346900 Sobic002G252100--Sobic002G371600 Sobic006G270600 Sobic006G270600 Sobic002G252100--Sobic006G270600 Sobic002G252100--Sobic001G098400 Sobic004G315500 Sobic004G315500 Sobic002G252100--Sobic004G315500 Sobic007G014800 Sobic007G014800 Sobic002G252100--Sobic007G014800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic004G285000 Sobic004G285000 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic003G309050--Sobic001G451300 Sobic001G393900 Sobic001G393900 Sobic003G309050--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic003G309050--Sobic002G043100 Sobic002G399800 Sobic002G399800 Sobic003G309050--Sobic002G399800 Sobic003G309050--Sobic002G371600 Sobic003G309050--Sobic006G245900 Sobic001G417500 Sobic001G417500 Sobic003G309050--Sobic001G417500 Sobic003G260400 Sobic003G260400 Sobic003G309050--Sobic003G260400 Sobic003G309050--Sobic010G262100 Sobic004G031300 Sobic004G031300 Sobic001G004100--Sobic004G031300 Sobic007G187600 Sobic007G187600 Sobic001G004100--Sobic007G187600 Sobic001G013300 Sobic001G013300 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G373000 Sobic001G373000 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic010G233000 Sobic010G233000 Sobic004G006600--Sobic010G233000 Sobic002G263200 Sobic002G263200 Sobic004G006600--Sobic002G263200 Sobic010G186600 Sobic010G186600 Sobic004G006600--Sobic010G186600 Sobic004G006600--Sobic001G098400 Sobic004G006600--Sobic001G373000 Sobic003G330900 Sobic003G330900 Sobic004G006600--Sobic003G330900 Sobic006G188500 Sobic006G188500 Sobic004G006600--Sobic006G188500 Sobic004G006600--Sobic009G255600 Sobic004G006600--Sobic004G315500 Sobic003G433300--Sobic003G308500 Sobic007G075800 Sobic007G075800 Sobic003G433300--Sobic007G075800 Sobic003G433300--Sobic001G098400 Sobic003G433300--Sobic002G371600 Sobic003G433300--Sobic004G031300 Sobic003G433300--Sobic006G125500 Sobic005G045700 Sobic005G045700 Sobic003G433300--Sobic005G045700 Sobic003G433300--Sobic002G252100 Sobic010G264900 Sobic010G264900 Sobic003G433300--Sobic010G264900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.