Gene annotation
Transcriptome id Sobic.004G006600.7
Synonym Sb04g000775
Functional annotation transcription factor jumonji, putative, expressed
UniProt A0A194YM35
Pfam PF02373
Panther DB PTHR12549
NCBI CDD KOG1356; Putative transcription factor 5qNCA, contains JmjC domain
KEGG Orthology K15601; [histone H3]-dimethyl-L-lysine9 demethylase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11950 : Transcription factor jumonji (jmjC) domain-containing protein
RAP-DB (Rice) LOC_Os02g01940.1 : transcription factor jumonji, putative, expressed
MaizeGDB (Corn) Zm00025a035080
Brachypodium KQK17541 , KQJ92845 , KQJ92844 , KQJ87481
Barley HORVU6Hr1G005010.1 , HORVU6Hr1G005010.2 , HORVU6Hr1G005010.3 , HORVU6Hr1G005010.5 , HORVU6Hr1G005010.8 , HORVU6Hr1G005010.9 , HORVU6Hr1G005010.18 , HORVU6Hr1G005010.12 , HORVU6Hr1G005010.11 , HORVU6Hr1G005010.16 , HORVU6Hr1G005010.17 , HORVU6Hr1G005010.14 , HORVU6Hr1G005010.15 , HORVU2Hr1G092380.1 , HORVU2Hr1G092380.2 , HORVU2Hr1G092380.3 , HORVU2Hr1G092380.4 , HORVU2Hr1G092380.5 , HORVU2Hr1G092380.6 , HORVU6Hr1G005010.6
Wheat TraesCS6B02G036900 , TraesCS6B02G036900 , TraesCS6A02G026500 , TraesCS6A02G026500
Populus -


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cDNA sequences
Sobic.004G006600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G233000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.002G263200 expressed protein -
3 Sobic.010G186600 expressed protein -
4 Sobic.001G098400 expressed protein K16278: E3 ubiquitin-protein ligase HOS1
5 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
6 Sobic.003G330900 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.006G188500 uncharacterized mscS family protein, putative, expressed -
8 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
9 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
10 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
12 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
13 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
14 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
15 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
16 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
17 Sobic.002G029100 GYF domain containing protein, putative, expressed -
18 Sobic.004G320100 expressed protein -
19 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
20 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5


Gene co-expression network
sample Sobic004G006600 Sobic004G006600 Sobic010G233000 Sobic010G233000 Sobic004G006600--Sobic010G233000 Sobic002G263200 Sobic002G263200 Sobic004G006600--Sobic002G263200 Sobic010G186600 Sobic010G186600 Sobic004G006600--Sobic010G186600 Sobic001G098400 Sobic001G098400 Sobic004G006600--Sobic001G098400 Sobic001G373000 Sobic001G373000 Sobic004G006600--Sobic001G373000 Sobic003G330900 Sobic003G330900 Sobic004G006600--Sobic003G330900 Sobic006G188500 Sobic006G188500 Sobic004G006600--Sobic006G188500 Sobic009G255600 Sobic009G255600 Sobic004G006600--Sobic009G255600 Sobic004G315500 Sobic004G315500 Sobic004G006600--Sobic004G315500 Sobic009G032200 Sobic009G032200 Sobic010G233000--Sobic009G032200 Sobic010G233000--Sobic004G006600 Sobic004G043750 Sobic004G043750 Sobic010G233000--Sobic004G043750 Sobic001G484200 Sobic001G484200 Sobic010G233000--Sobic001G484200 Sobic004G177600 Sobic004G177600 Sobic010G233000--Sobic004G177600 Sobic010G236200 Sobic010G236200 Sobic010G233000--Sobic010G236200 Sobic008G057000 Sobic008G057000 Sobic010G233000--Sobic008G057000 Sobic010G215900 Sobic010G215900 Sobic010G233000--Sobic010G215900 Sobic003G221500 Sobic003G221500 Sobic010G233000--Sobic003G221500 Sobic002G263200--Sobic001G373000 Sobic002G263200--Sobic004G006600 Sobic002G263200--Sobic010G186600 Sobic001G023800 Sobic001G023800 Sobic002G263200--Sobic001G023800 Sobic003G408300 Sobic003G408300 Sobic002G263200--Sobic003G408300 Sobic009G143800 Sobic009G143800 Sobic002G263200--Sobic009G143800 Sobic005G047300 Sobic005G047300 Sobic002G263200--Sobic005G047300 Sobic001G013300 Sobic001G013300 Sobic002G263200--Sobic001G013300 Sobic001G346900 Sobic001G346900 Sobic002G263200--Sobic001G346900 Sobic010G186600--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic010G186600--Sobic008G147200 Sobic002G145800 Sobic002G145800 Sobic010G186600--Sobic002G145800 Sobic001G291800 Sobic001G291800 Sobic010G186600--Sobic001G291800 Sobic002G005000 Sobic002G005000 Sobic010G186600--Sobic002G005000 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic003G308500 Sobic003G308500 Sobic001G098400--Sobic003G308500 Sobic006G125500 Sobic006G125500 Sobic001G098400--Sobic006G125500 Sobic002G252100 Sobic002G252100 Sobic001G098400--Sobic002G252100 Sobic002G371600 Sobic002G371600 Sobic001G098400--Sobic002G371600 Sobic001G098400--Sobic001G346900 Sobic003G309050 Sobic003G309050 Sobic001G098400--Sobic003G309050 Sobic001G004100 Sobic001G004100 Sobic001G098400--Sobic001G004100 Sobic001G098400--Sobic004G006600 Sobic003G433300 Sobic003G433300 Sobic001G098400--Sobic003G433300 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic001G239800 Sobic001G239800 Sobic003G330900--Sobic001G239800 Sobic001G440100 Sobic001G440100 Sobic003G330900--Sobic001G440100 Sobic003G330900--Sobic001G052400 Sobic003G330900--Sobic004G006600 Sobic002G374300 Sobic002G374300 Sobic003G330900--Sobic002G374300 Sobic006G125900 Sobic006G125900 Sobic003G330900--Sobic006G125900 Sobic003G330900--Sobic004G315500 Sobic010G038100 Sobic010G038100 Sobic003G330900--Sobic010G038100 Sobic001G501800 Sobic001G501800 Sobic003G330900--Sobic001G501800 Sobic003G046300 Sobic003G046300 Sobic006G188500--Sobic003G046300 Sobic007G000200 Sobic007G000200 Sobic006G188500--Sobic007G000200 Sobic009G003700 Sobic009G003700 Sobic006G188500--Sobic009G003700 Sobic009G234700 Sobic009G234700 Sobic006G188500--Sobic009G234700 Sobic001G488100 Sobic001G488100 Sobic006G188500--Sobic001G488100 Sobic001G487100 Sobic001G487100 Sobic006G188500--Sobic001G487100 Sobic005G175000 Sobic005G175000 Sobic006G188500--Sobic005G175000 Sobic006G188500--Sobic004G006600 Sobic001G462600 Sobic001G462600 Sobic006G188500--Sobic001G462600 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic004G315500--Sobic001G488100 Sobic005G010900 Sobic005G010900 Sobic004G315500--Sobic005G010900 Sobic004G315500--Sobic001G373000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100
Octagon: transcription factors


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