Gene annotation
Transcriptome id Sobic.002G263200.1,Sobic.002G263200.2,Sobic.002G263200.3
Synonym Sb02g029810
Functional annotation expressed protein
UniProt A0A1B6QDL3 , A0A1B6QDK4 , A0A1B6QDL1
Pfam -
Panther DB PTHR36376 PTHR36376:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os09g33960.1 : expressed protein
MaizeGDB (Corn) Zm00025a047655
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G263200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
2 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
3 Sobic.010G186600 expressed protein -
4 Sobic.001G023800 expressed protein -
5 Sobic.003G408300 WD domain, G-beta repeat domain containing protein, expressed K14791: periodic tryptophan protein 1
6 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
7 Sobic.005G047300 OsFBT13 - F-box and tubby domain containing protein, expressed -
8 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
9 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
10 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.008G147200 tubulin, putative, expressed -
12 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
13 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
14 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
15 Sobic.001G222000 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
17 Sobic.007G187600 pentatricopeptide, putative, expressed -
18 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
19 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
20 Sobic.003G217200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic002G263200 Sobic002G263200 Sobic001G373000 Sobic001G373000 Sobic002G263200--Sobic001G373000 Sobic004G006600 Sobic004G006600 Sobic002G263200--Sobic004G006600 Sobic010G186600 Sobic010G186600 Sobic002G263200--Sobic010G186600 Sobic001G023800 Sobic001G023800 Sobic002G263200--Sobic001G023800 Sobic003G408300 Sobic003G408300 Sobic002G263200--Sobic003G408300 Sobic009G143800 Sobic009G143800 Sobic002G263200--Sobic009G143800 Sobic005G047300 Sobic005G047300 Sobic002G263200--Sobic005G047300 Sobic001G013300 Sobic001G013300 Sobic002G263200--Sobic001G013300 Sobic001G346900 Sobic001G346900 Sobic002G263200--Sobic001G346900 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic010G233000 Sobic010G233000 Sobic004G006600--Sobic010G233000 Sobic004G006600--Sobic002G263200 Sobic004G006600--Sobic010G186600 Sobic001G098400 Sobic001G098400 Sobic004G006600--Sobic001G098400 Sobic004G006600--Sobic001G373000 Sobic003G330900 Sobic003G330900 Sobic004G006600--Sobic003G330900 Sobic006G188500 Sobic006G188500 Sobic004G006600--Sobic006G188500 Sobic009G255600 Sobic009G255600 Sobic004G006600--Sobic009G255600 Sobic004G315500 Sobic004G315500 Sobic004G006600--Sobic004G315500 Sobic010G186600--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic010G186600--Sobic008G147200 Sobic002G145800 Sobic002G145800 Sobic010G186600--Sobic002G145800 Sobic001G291800 Sobic001G291800 Sobic010G186600--Sobic001G291800 Sobic010G186600--Sobic002G005000 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200 Sobic001G023800--Sobic010G266500 Sobic007G187600 Sobic007G187600 Sobic001G023800--Sobic007G187600 Sobic001G023800--Sobic010G186600 Sobic001G023800--Sobic002G005000 Sobic001G023800--Sobic001G373000 Sobic003G427100 Sobic003G427100 Sobic001G023800--Sobic003G427100 Sobic001G023800--Sobic001G013300 Sobic008G164600 Sobic008G164600 Sobic001G023800--Sobic008G164600 Sobic001G023800--Sobic001G291800 Sobic008G016100 Sobic008G016100 Sobic003G408300--Sobic008G016100 Sobic003G408300--Sobic002G263200 Sobic007G187900 Sobic007G187900 Sobic003G408300--Sobic007G187900 Sobic002G116500 Sobic002G116500 Sobic003G408300--Sobic002G116500 Sobic001G168100 Sobic001G168100 Sobic003G408300--Sobic001G168100 Sobic006G084000 Sobic006G084000 Sobic003G408300--Sobic006G084000 Sobic002G332200 Sobic002G332200 Sobic003G408300--Sobic002G332200 Sobic006G251500 Sobic006G251500 Sobic003G408300--Sobic006G251500 Sobic003G408300--Sobic009G143800 Sobic004G353000 Sobic004G353000 Sobic009G143800--Sobic004G353000 Sobic001G259000 Sobic001G259000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic009G143800--Sobic001G291800 Sobic001G051700 Sobic001G051700 Sobic005G047300--Sobic001G051700 Sobic001G315400 Sobic001G315400 Sobic005G047300--Sobic001G315400 Sobic005G047300--Sobic003G409200 Sobic008G057000 Sobic008G057000 Sobic005G047300--Sobic008G057000 Sobic005G047300--Sobic002G263200 Sobic005G047300--Sobic001G346900 Sobic005G047300--Sobic001G013300 Sobic005G047300--Sobic001G373000 Sobic002G148400 Sobic002G148400 Sobic005G047300--Sobic002G148400 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic001G013300--Sobic007G187600 Sobic001G013300--Sobic001G023800 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100
Octagon: transcription factors


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