Gene annotation
Transcriptome id Sobic.003G408300.1
Synonym Sb03g044310
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XGD5
Pfam PF00400
Panther DB PTHR14091
NCBI CDD KOG0270; WD40 repeat-containing protein
KEGG Orthology K14791; periodic tryptophan protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G18905 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g69970.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026226
Brachypodium -
Barley HORVU1Hr1G092950.6 , HORVU1Hr1G092950.7 , HORVU1Hr1G092950.4 , HORVU1Hr1G092950.5 , HORVU1Hr1G092950.3 , HORVU1Hr1G092950.1 , HORVU1Hr1G092950.8 , HORVU1Hr1G092950.9 , HORVU1Hr1G092950.10 , HORVU1Hr1G092950.11 , HORVU1Hr1G092950.12
Wheat -
Populus -


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cDNA sequences
Sobic.003G408300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G016100 WD domain, G-beta repeat domain containing protein, expressed K14848: RRB1, ribosome assembly protein RRB1
2 Sobic.002G263200 expressed protein -
3 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
4 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
5 Sobic.001G168100 OsFBD13 - F-box and FBD domain containing protein, expressed -
6 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
7 Sobic.002G332200 proteasome inhibitor-related, putative, expressed K06700: proteasome inhibitor subunit 1 (PI31)
8 Sobic.006G251500 inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed K10572: inositol-pentakisphosphate 2-kinase
9 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
10 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
11 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
12 Sobic.008G080000 leucine-rich repeat family protein, putative, expressed -
13 Sobic.006G043700 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
14 Sobic.001G033900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
16 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
17 Sobic.002G242700 expressed protein K15202: GTF3C5, general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
18 Sobic.007G053100 amino acid permease family protein, putative, expressed -
19 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
20 Sobic.003G376500 SET domain containing protein, expressed K05302: N-lysine methyltransferase SETD6


Gene co-expression network
sample Sobic003G408300 Sobic003G408300 Sobic008G016100 Sobic008G016100 Sobic003G408300--Sobic008G016100 Sobic002G263200 Sobic002G263200 Sobic003G408300--Sobic002G263200 Sobic007G187900 Sobic007G187900 Sobic003G408300--Sobic007G187900 Sobic002G116500 Sobic002G116500 Sobic003G408300--Sobic002G116500 Sobic001G168100 Sobic001G168100 Sobic003G408300--Sobic001G168100 Sobic006G084000 Sobic006G084000 Sobic003G408300--Sobic006G084000 Sobic002G332200 Sobic002G332200 Sobic003G408300--Sobic002G332200 Sobic006G251500 Sobic006G251500 Sobic003G408300--Sobic006G251500 Sobic009G143800 Sobic009G143800 Sobic003G408300--Sobic009G143800 Sobic008G016100--Sobic003G408300 Sobic008G016100--Sobic002G116500 Sobic001G382200 Sobic001G382200 Sobic008G016100--Sobic001G382200 Sobic006G135900 Sobic006G135900 Sobic008G016100--Sobic006G135900 Sobic009G258500 Sobic009G258500 Sobic008G016100--Sobic009G258500 Sobic001G193500 Sobic001G193500 Sobic008G016100--Sobic001G193500 Sobic001G471000 Sobic001G471000 Sobic008G016100--Sobic001G471000 Sobic009G219400 Sobic009G219400 Sobic008G016100--Sobic009G219400 Sobic001G007800 Sobic001G007800 Sobic008G016100--Sobic001G007800 Sobic001G373000 Sobic001G373000 Sobic002G263200--Sobic001G373000 Sobic004G006600 Sobic004G006600 Sobic002G263200--Sobic004G006600 Sobic010G186600 Sobic010G186600 Sobic002G263200--Sobic010G186600 Sobic001G023800 Sobic001G023800 Sobic002G263200--Sobic001G023800 Sobic002G263200--Sobic003G408300 Sobic002G263200--Sobic009G143800 Sobic005G047300 Sobic005G047300 Sobic002G263200--Sobic005G047300 Sobic001G013300 Sobic001G013300 Sobic002G263200--Sobic001G013300 Sobic001G346900 Sobic001G346900 Sobic002G263200--Sobic001G346900 Sobic007G187900--Sobic003G408300 Sobic001G517200 Sobic001G517200 Sobic007G187900--Sobic001G517200 Sobic009G105900 Sobic009G105900 Sobic007G187900--Sobic009G105900 Sobic003G235000 Sobic003G235000 Sobic007G187900--Sobic003G235000 Sobic002G429400 Sobic002G429400 Sobic007G187900--Sobic002G429400 Sobic003G006400 Sobic003G006400 Sobic007G187900--Sobic003G006400 Sobic002G429700 Sobic002G429700 Sobic007G187900--Sobic002G429700 Sobic007G187900--Sobic001G471000 Sobic003G382500 Sobic003G382500 Sobic007G187900--Sobic003G382500 Sobic002G116500--Sobic001G193500 Sobic002G116500--Sobic008G016100 Sobic003G118400 Sobic003G118400 Sobic002G116500--Sobic003G118400 Sobic004G247100 Sobic004G247100 Sobic002G116500--Sobic004G247100 Sobic002G116500--Sobic001G382200 Sobic002G116500--Sobic003G408300 Sobic002G116500--Sobic006G084000 Sobic002G144275 Sobic002G144275 Sobic002G116500--Sobic002G144275 Sobic009G195700 Sobic009G195700 Sobic002G116500--Sobic009G195700 Sobic002G177500 Sobic002G177500 Sobic001G168100--Sobic002G177500 Sobic001G168100--Sobic001G013300 Sobic004G285000 Sobic004G285000 Sobic001G168100--Sobic004G285000 Sobic002G223300 Sobic002G223300 Sobic001G168100--Sobic002G223300 Sobic003G223500 Sobic003G223500 Sobic001G168100--Sobic003G223500 Sobic007G043400 Sobic007G043400 Sobic001G168100--Sobic007G043400 Sobic001G168100--Sobic003G408300 Sobic002G339800 Sobic002G339800 Sobic001G168100--Sobic002G339800 Sobic001G168100--Sobic001G023800 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic008G160000 Sobic008G160000 Sobic006G084000--Sobic008G160000 Sobic006G010400 Sobic006G010400 Sobic006G084000--Sobic006G010400 Sobic003G407600 Sobic003G407600 Sobic006G084000--Sobic003G407600 Sobic004G224600 Sobic004G224600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic006G084000--Sobic003G382500 Sobic010G247400 Sobic010G247400 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500 Sobic003G295700 Sobic003G295700 Sobic002G332200--Sobic003G295700 Sobic002G332200--Sobic003G408300 Sobic009G169200 Sobic009G169200 Sobic002G332200--Sobic009G169200 Sobic002G332200--Sobic002G116500 Sobic004G033200 Sobic004G033200 Sobic002G332200--Sobic004G033200 Sobic009G028100 Sobic009G028100 Sobic002G332200--Sobic009G028100 Sobic008G116600 Sobic008G116600 Sobic002G332200--Sobic008G116600 Sobic003G121800 Sobic003G121800 Sobic002G332200--Sobic003G121800 Sobic001G460100 Sobic001G460100 Sobic002G332200--Sobic001G460100 Sobic007G053100 Sobic007G053100 Sobic006G251500--Sobic007G053100 Sobic002G266300 Sobic002G266300 Sobic006G251500--Sobic002G266300 Sobic009G052600 Sobic009G052600 Sobic006G251500--Sobic009G052600 Sobic006G053200 Sobic006G053200 Sobic006G251500--Sobic006G053200 Sobic003G427300 Sobic003G427300 Sobic006G251500--Sobic003G427300 Sobic008G191850 Sobic008G191850 Sobic006G251500--Sobic008G191850 Sobic005G045700 Sobic005G045700 Sobic006G251500--Sobic005G045700 Sobic001G254700 Sobic001G254700 Sobic006G251500--Sobic001G254700 Sobic004G066500 Sobic004G066500 Sobic006G251500--Sobic004G066500 Sobic004G353000 Sobic004G353000 Sobic009G143800--Sobic004G353000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic001G291800 Sobic001G291800 Sobic009G143800--Sobic001G291800
Octagon: transcription factors


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