Gene annotation
Transcriptome id Sobic.007G092200.2,Sobic.007G092200.1
Synonym PYRB, Sb07g008570
Functional annotation aspartate carbamoyltransferase, putative, expressed
UniProt A0A1B6PGM1 , A0A1B6PGM0
Pfam PF00185 PF02729
Panther DB PTHR11405 PTHR11405:SF16
NCBI CDD KOG1504; Ornithine carbamoyltransferase OTC/ARG3
KEGG Orthology K00609; pyrB, aspartate carbamoyltransferase catalytic subunit
Gene Ontology GO:0016743; carboxyl- or carbamoyltransferase activity GO:0016597amino acid binding GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT3G20330 : PYRIMIDINE B
RAP-DB (Rice) LOC_Os08g15030.1 : aspartate carbamoyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a054729 , Zm00025a030886
Brachypodium KQJ95787
Barley HORVU2Hr1G064550.1 , HORVU2Hr1G064550.2 , HORVU2Hr1G064550.3 , HORVU2Hr1G064550.4 , HORVU2Hr1G064550.5 , HORVU5Hr1G034500.1
Wheat TraesCS5A02G120200 , TraesCS5D02G124500 , TraesCS5B02G121700
Populus -


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cDNA sequences
Sobic.007G092200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
2 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
3 Sobic.006G225400 zinc finger protein, putative, expressed -
4 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
5 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
6 Sobic.001G457200 mitochondrial carrier protein, putative, expressed -
7 Sobic.005G088900 AGAP007117-PA, putative, expressed -
8 Sobic.005G079201 - -
9 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
10 Sobic.002G256800 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
11 Sobic.006G043700 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
12 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
13 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
14 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
15 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
16 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
17 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
18 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
19 Sobic.003G408300 WD domain, G-beta repeat domain containing protein, expressed K14791: periodic tryptophan protein 1
20 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase


Gene co-expression network
sample Sobic007G092200 Sobic007G092200 Sobic009G071700 Sobic009G071700 Sobic007G092200--Sobic009G071700 Sobic009G191500 Sobic009G191500 Sobic007G092200--Sobic009G191500 Sobic006G225400 Sobic006G225400 Sobic007G092200--Sobic006G225400 Sobic003G336500 Sobic003G336500 Sobic007G092200--Sobic003G336500 Sobic007G137350 Sobic007G137350 Sobic007G092200--Sobic007G137350 Sobic001G457200 Sobic001G457200 Sobic007G092200--Sobic001G457200 Sobic005G088900 Sobic005G088900 Sobic007G092200--Sobic005G088900 Sobic005G079201 Sobic005G079201 Sobic007G092200--Sobic005G079201 Sobic001G372800 Sobic001G372800 Sobic007G092200--Sobic001G372800 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic009G071700--Sobic007G137350 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic009G071700--Sobic007G092200 Sobic008G068100 Sobic008G068100 Sobic009G191500--Sobic008G068100 Sobic004G215900 Sobic004G215900 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic005G028100 Sobic005G028100 Sobic006G225400--Sobic005G028100 Sobic006G225400--Sobic006G251600 Sobic004G036700 Sobic004G036700 Sobic006G225400--Sobic004G036700 Sobic006G225400--Sobic003G425100 Sobic006G225400--Sobic009G071700 Sobic010G205900 Sobic010G205900 Sobic006G225400--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic006G225400--Sobic003G123200 Sobic001G401400 Sobic001G401400 Sobic006G225400--Sobic001G401400 Sobic006G225400--Sobic006G198600 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic007G137350--Sobic009G071700 Sobic007G137350--Sobic004G173100 Sobic007G137350--Sobic007G092200 Sobic007G137350--Sobic005G100900 Sobic009G228500 Sobic009G228500 Sobic007G137350--Sobic009G228500 Sobic004G082700 Sobic004G082700 Sobic007G137350--Sobic004G082700 Sobic007G137350--Sobic006G251600 Sobic001G157300 Sobic001G157300 Sobic007G137350--Sobic001G157300 Sobic007G137350--Sobic006G198600 Sobic001G457200--Sobic009G071700 Sobic001G457200--Sobic003G425100 Sobic001G457200--Sobic006G225400 Sobic001G457200--Sobic007G092200 Sobic009G163600 Sobic009G163600 Sobic001G457200--Sobic009G163600 Sobic001G457200--Sobic005G100900 Sobic001G457200--Sobic006G198600 Sobic002G262100 Sobic002G262100 Sobic001G457200--Sobic002G262100 Sobic001G457200--Sobic006G251600 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic005G088900--Sobic009G176300 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic005G088900--Sobic002G003300 Sobic005G079201--Sobic008G068100 Sobic005G079201--Sobic009G191500 Sobic005G079201--Sobic004G215900 Sobic006G236000 Sobic006G236000 Sobic005G079201--Sobic006G236000 Sobic005G079201--Sobic005G088900 Sobic008G090000 Sobic008G090000 Sobic005G079201--Sobic008G090000 Sobic002G043000 Sobic002G043000 Sobic005G079201--Sobic002G043000 Sobic005G079201--Sobic002G003300 Sobic001G408300 Sobic001G408300 Sobic005G079201--Sobic001G408300 Sobic001G372800--Sobic001G483800 Sobic002G268100 Sobic002G268100 Sobic001G372800--Sobic002G268100 Sobic003G322200 Sobic003G322200 Sobic001G372800--Sobic003G322200 Sobic009G010300 Sobic009G010300 Sobic001G372800--Sobic009G010300 Sobic001G372800--Sobic009G191500 Sobic001G372800--Sobic001G401400 Sobic010G038800 Sobic010G038800 Sobic001G372800--Sobic010G038800 Sobic001G372800--Sobic005G028100 Sobic001G372800--Sobic003G432300
Octagon: transcription factors


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