Gene annotation
Transcriptome id Sobic.009G071700.1
Synonym Sb09g006020
Functional annotation O-sialoglycoprotein endopeptidase, putative, expressed
UniProt A0A1Z5R2K0
Pfam PF00814
Panther DB PTHR11735 PTHR11735:SF14
NCBI CDD -
KEGG Orthology K01409; KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G22720 : Actin-like ATPase superfamily protein
RAP-DB (Rice) LOC_Os05g10630.1 : O-sialoglycoprotein endopeptidase, putative, expressed
MaizeGDB (Corn) Zm00025a057239 , Zm00025a013877 , Zm00025a006378 , Zm00025a028416 , Zm00025a043078 , Zm00025a009548 , Zm00025a050285
Brachypodium KQK07134 , KQK07135 , KQK07136 , PNT71657 , PNT71658
Barley HORVU1Hr1G028330.3 , HORVU1Hr1G028330.2 , HORVU1Hr1G028330.1
Wheat TraesCS1D02G130800 , TraesCS1B02G143400 , TraesCS1A02G123600
Populus -


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cDNA sequences
Sobic.009G071700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
2 Sobic.001G457200 mitochondrial carrier protein, putative, expressed -
3 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
4 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
5 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
6 Sobic.006G225400 zinc finger protein, putative, expressed -
7 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
8 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
9 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
10 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
11 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
12 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
13 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
14 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
15 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
16 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
17 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
18 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
19 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
20 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin


Gene co-expression network
sample Sobic009G071700 Sobic009G071700 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic001G457200--Sobic009G071700 Sobic001G457200--Sobic003G425100 Sobic001G457200--Sobic006G225400 Sobic001G457200--Sobic007G092200 Sobic009G163600 Sobic009G163600 Sobic001G457200--Sobic009G163600 Sobic001G457200--Sobic005G100900 Sobic001G457200--Sobic006G198600 Sobic002G262100 Sobic002G262100 Sobic001G457200--Sobic002G262100 Sobic001G457200--Sobic006G251600 Sobic003G123200 Sobic003G123200 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic008G163500 Sobic008G163500 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic004G036700 Sobic004G036700 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500 Sobic007G137350--Sobic009G071700 Sobic007G137350--Sobic004G173100 Sobic007G137350--Sobic007G092200 Sobic007G137350--Sobic005G100900 Sobic009G228500 Sobic009G228500 Sobic007G137350--Sobic009G228500 Sobic004G082700 Sobic004G082700 Sobic007G137350--Sobic004G082700 Sobic007G137350--Sobic006G251600 Sobic007G137350--Sobic001G157300 Sobic007G137350--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic006G225400--Sobic005G028100 Sobic006G225400--Sobic006G251600 Sobic006G225400--Sobic004G036700 Sobic006G225400--Sobic003G425100 Sobic006G225400--Sobic009G071700 Sobic006G225400--Sobic010G205900 Sobic006G225400--Sobic003G123200 Sobic006G225400--Sobic001G401400 Sobic006G225400--Sobic006G198600 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic008G165900 Sobic008G165900 Sobic005G100900--Sobic008G165900 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic010G224700 Sobic010G224700 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic007G092200--Sobic009G071700 Sobic009G191500 Sobic009G191500 Sobic007G092200--Sobic009G191500 Sobic007G092200--Sobic006G225400 Sobic003G336500 Sobic003G336500 Sobic007G092200--Sobic003G336500 Sobic007G092200--Sobic007G137350 Sobic007G092200--Sobic001G457200 Sobic005G088900 Sobic005G088900 Sobic007G092200--Sobic005G088900 Sobic005G079201 Sobic005G079201 Sobic007G092200--Sobic005G079201 Sobic001G372800 Sobic001G372800 Sobic007G092200--Sobic001G372800
Octagon: transcription factors


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