Gene annotation
Transcriptome id Sobic.002G238000.1
Synonym Sb02g027580
Functional annotation RNA 3-terminal phosphate cyclase, putative, expressed
UniProt C5X358
Pfam PF05189 PF01137
Panther DB PTHR11096 PTHR11096:SF1
NCBI CDD KOG3980; RNA 3'-terminal phosphate cyclase
KEGG Orthology K11108; RNA 3'-terminal phosphate cyclase-like protein
Gene Ontology GO:0006396; RNA processing


Orthologs (automatic annotation)
TAIR AT5G22100 : RNA cyclase family protein
RAP-DB (Rice) LOC_Os03g61790.1 : RNA 3-terminal phosphate cyclase, putative, expressed
MaizeGDB (Corn) Zm00025a047383
Brachypodium KQK12294 , KQK12292
Barley HORVU5Hr1G117450.12 , HORVU5Hr1G117450.7 , HORVU5Hr1G117450.6 , HORVU5Hr1G117450.5 , HORVU5Hr1G117450.4 , HORVU5Hr1G117450.3 , HORVU5Hr1G117450.2 , HORVU5Hr1G117450.1 , HORVU5Hr1G117450.9 , HORVU5Hr1G117450.8 , HORVU5Hr1G117450.15 , HORVU5Hr1G117450.14 , HORVU5Hr1G117450.13 , HORVU5Hr1G117450.11 , HORVU5Hr1G117450.10
Wheat TraesCS2B02G022400 , TraesCS5D02G513500 , TraesCS5D02G090500 , TraesCS5B02G512900 , TraesCS4A02G358600 , TraesCS5B02G083400 , TraesCS5A02G082100 , TraesCS5B02G084300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
2 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
3 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
4 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
5 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
6 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
7 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
8 Sobic.002G092050 - -
9 Sobic.004G268100 ornithine carbamoyltransferase, putative, expressed K00611: OTC, argF, ornithine carbamoyltransferase
10 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
11 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
12 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
14 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
15 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
16 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
17 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
18 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
19 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
20 Sobic.010G031500 - -


Gene co-expression network
sample Sobic002G238000 Sobic002G238000 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic008G165900 Sobic008G165900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic006G125900 Sobic006G125900 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100 Sobic005G100900--Sobic002G238000 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic003G425100 Sobic003G425100 Sobic005G100900--Sobic003G425100 Sobic001G119600 Sobic001G119600 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic005G100900--Sobic008G165900 Sobic008G165900--Sobic001G224200 Sobic003G332900 Sobic003G332900 Sobic008G165900--Sobic003G332900 Sobic008G165900--Sobic002G238000 Sobic006G128400 Sobic006G128400 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic001G207200 Sobic001G207200 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic009G071700--Sobic005G100900 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic004G340400 Sobic004G340400 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic001G544500 Sobic001G544500 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic010G228700--Sobic006G125900 Sobic001G224200--Sobic008G165900 Sobic001G224200--Sobic006G128400 Sobic001G224200--Sobic001G207200 Sobic001G224200--Sobic007G075800 Sobic001G224200--Sobic002G238000 Sobic001G224200--Sobic001G119600 Sobic001G224200--Sobic003G332900 Sobic001G501400 Sobic001G501400 Sobic001G224200--Sobic001G501400 Sobic004G030800 Sobic004G030800 Sobic001G224200--Sobic004G030800 Sobic002G092050--Sobic002G378100 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic002G092050--Sobic001G501400 Sobic002G092050--Sobic002G238000 Sobic009G029700 Sobic009G029700 Sobic004G268100--Sobic009G029700 Sobic002G332400 Sobic002G332400 Sobic004G268100--Sobic002G332400 Sobic009G124000 Sobic009G124000 Sobic004G268100--Sobic009G124000 Sobic004G268100--Sobic002G238000 Sobic001G437200 Sobic001G437200 Sobic004G268100--Sobic001G437200 Sobic003G310100 Sobic003G310100 Sobic004G268100--Sobic003G310100 Sobic006G170200 Sobic006G170200 Sobic004G268100--Sobic006G170200 Sobic004G214400 Sobic004G214400 Sobic004G268100--Sobic004G214400 Sobic001G375000 Sobic001G375000 Sobic004G268100--Sobic001G375000
Octagon: transcription factors


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