Gene annotation
Transcriptome id Sobic.003G332900.1,Sobic.003G332900.2
Synonym Sb03g037800
Functional annotation expressed protein
UniProt A0A1W0W041 , C5XN59
Pfam PF10453
Panther DB PTHR13309
NCBI CDD -
KEGG Orthology K14404; CPSF4, cleavage and polyadenylation specificity factor subunit 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18440 : -
RAP-DB (Rice) LOC_Os01g59860.1 : expressed protein
MaizeGDB (Corn) Zm00025a027115
Brachypodium KQK10273 , PNT73078
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
2 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
3 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G207200 MEE12, putative, expressed -
5 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
6 Sobic.002G131000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@T-complex protein, putative, expressed -
7 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
8 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
9 Sobic.006G128400 PPR repeat containing protein, expressed -
10 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
11 Sobic.003G039300 expressed protein -
12 Sobic.002G146400 - -
13 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
14 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
15 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
16 Sobic.004G027300 expressed protein -
17 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
18 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
19 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
20 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -


Gene co-expression network
sample Sobic003G332900 Sobic003G332900 Sobic008G165900 Sobic008G165900 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic008G165900--Sobic001G224200 Sobic008G165900--Sobic003G332900 Sobic002G238000 Sobic002G238000 Sobic008G165900--Sobic002G238000 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic007G227600 Sobic007G227600 Sobic010G211500--Sobic007G227600 Sobic009G036300 Sobic009G036300 Sobic010G211500--Sobic009G036300 Sobic010G211500--Sobic001G207200 Sobic009G052700 Sobic009G052700 Sobic010G211500--Sobic009G052700 Sobic003G084500 Sobic003G084500 Sobic010G211500--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic010G211500--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic010G211500--Sobic003G334100 Sobic010G183400 Sobic010G183400 Sobic010G211500--Sobic010G183400 Sobic010G074100 Sobic010G074100 Sobic010G211500--Sobic010G074100 Sobic003G425100 Sobic003G425100 Sobic004G231600--Sobic003G425100 Sobic004G231600--Sobic003G332900 Sobic004G231600--Sobic002G131000 Sobic004G027300 Sobic004G027300 Sobic004G231600--Sobic004G027300 Sobic004G231600--Sobic008G165900 Sobic004G231600--Sobic001G207200 Sobic002G378100 Sobic002G378100 Sobic004G231600--Sobic002G378100 Sobic001G422500 Sobic001G422500 Sobic004G231600--Sobic001G422500 Sobic004G231600--Sobic006G128400 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G207200--Sobic001G224200 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic001G119600 Sobic001G119600 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic007G145100 Sobic007G145100 Sobic008G022701--Sobic007G145100 Sobic005G100900 Sobic005G100900 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic001G502600 Sobic001G502600 Sobic008G022701--Sobic001G502600 Sobic008G022701--Sobic004G027300 Sobic002G131000--Sobic003G332900 Sobic002G131000--Sobic010G211500 Sobic002G131000--Sobic004G231600 Sobic002G131000--Sobic001G207200 Sobic002G131000--Sobic007G227600 Sobic003G068500 Sobic003G068500 Sobic002G131000--Sobic003G068500 Sobic003G356100 Sobic003G356100 Sobic002G131000--Sobic003G356100 Sobic002G131000--Sobic010G074100 Sobic005G028900 Sobic005G028900 Sobic002G131000--Sobic005G028900 Sobic001G224200--Sobic008G165900 Sobic001G224200--Sobic006G128400 Sobic001G224200--Sobic001G207200 Sobic001G224200--Sobic007G075800 Sobic001G224200--Sobic002G238000 Sobic001G224200--Sobic001G119600 Sobic001G224200--Sobic003G332900 Sobic001G501400 Sobic001G501400 Sobic001G224200--Sobic001G501400 Sobic004G030800 Sobic004G030800 Sobic001G224200--Sobic004G030800 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G238100--Sobic009G036300 Sobic003G030400 Sobic003G030400 Sobic009G238100--Sobic003G030400 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic006G128400--Sobic002G378100 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic006G128400--Sobic001G224200 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100
Octagon: transcription factors


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