Gene annotation
Transcriptome id Sobic.002G131000.1
Synonym EMB3007, Sb02g011260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
T-complex protein, putative, expressed
UniProt C5X5T6
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF99
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G18820 : TCP-1/cpn60 chaperonin family protein
RAP-DB (Rice) LOC_Os09g38980.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a013517
Brachypodium PNT65171 , PNT65170 , KQJ91506 , KQJ91505 , KQJ91504
Barley HORVU0Hr1G038830.8 , HORVU0Hr1G038830.9 , HORVU0Hr1G038830.4 , HORVU0Hr1G038830.5 , HORVU0Hr1G038830.6 , HORVU0Hr1G038830.7 , HORVU0Hr1G038830.1 , HORVU0Hr1G038830.2 , HORVU0Hr1G038830.3 , HORVU0Hr1G038830.18 , HORVU0Hr1G038830.19 , HORVU0Hr1G038830.16 , HORVU0Hr1G038830.17 , HORVU0Hr1G038830.14 , HORVU0Hr1G038830.15 , HORVU0Hr1G038830.12 , HORVU0Hr1G038830.13 , HORVU0Hr1G038830.10 , HORVU0Hr1G038830.11 , HORVU0Hr1G038830.21 , HORVU0Hr1G038830.20
Wheat TraesCS5D02G376000 , TraesCS5B02G368900 , TraesCS5A02G366800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
2 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
3 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G207200 MEE12, putative, expressed -
5 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
6 Sobic.003G068500 receptor kinase, putative, expressed -
7 Sobic.003G356100 CRR2, putative, expressed -
8 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
9 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
10 Sobic.005G138600 - -
11 Sobic.009G052700 4Fe-4S binding domain containing protein, expressed -
12 Sobic.003G068600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
13 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
14 Sobic.004G098000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
16 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
17 Sobic.004G144000 - -
18 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
19 Sobic.003G359500 expressed protein -
20 Sobic.002G339300 myosin-Vb, putative, expressed K10357: myosin V


Gene co-expression network
sample Sobic002G131000 Sobic002G131000 Sobic003G332900 Sobic003G332900 Sobic002G131000--Sobic003G332900 Sobic010G211500 Sobic010G211500 Sobic002G131000--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic002G131000--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic002G131000--Sobic001G207200 Sobic007G227600 Sobic007G227600 Sobic002G131000--Sobic007G227600 Sobic003G068500 Sobic003G068500 Sobic002G131000--Sobic003G068500 Sobic003G356100 Sobic003G356100 Sobic002G131000--Sobic003G356100 Sobic010G074100 Sobic010G074100 Sobic002G131000--Sobic010G074100 Sobic005G028900 Sobic005G028900 Sobic002G131000--Sobic005G028900 Sobic008G165900 Sobic008G165900 Sobic003G332900--Sobic008G165900 Sobic003G332900--Sobic010G211500 Sobic003G332900--Sobic004G231600 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic010G211500--Sobic007G227600 Sobic009G036300 Sobic009G036300 Sobic010G211500--Sobic009G036300 Sobic010G211500--Sobic001G207200 Sobic009G052700 Sobic009G052700 Sobic010G211500--Sobic009G052700 Sobic003G084500 Sobic003G084500 Sobic010G211500--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic010G211500--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic010G211500--Sobic003G334100 Sobic010G183400 Sobic010G183400 Sobic010G211500--Sobic010G183400 Sobic010G211500--Sobic010G074100 Sobic003G425100 Sobic003G425100 Sobic004G231600--Sobic003G425100 Sobic004G231600--Sobic003G332900 Sobic004G231600--Sobic002G131000 Sobic004G027300 Sobic004G027300 Sobic004G231600--Sobic004G027300 Sobic004G231600--Sobic008G165900 Sobic004G231600--Sobic001G207200 Sobic002G378100 Sobic002G378100 Sobic004G231600--Sobic002G378100 Sobic001G422500 Sobic001G422500 Sobic004G231600--Sobic001G422500 Sobic004G231600--Sobic006G128400 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G501300 Sobic001G501300 Sobic001G207200--Sobic001G501300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G207200--Sobic001G224200 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic001G388400 Sobic001G388400 Sobic007G227600--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic007G227600--Sobic009G234200 Sobic010G028000 Sobic010G028000 Sobic007G227600--Sobic010G028000 Sobic010G074200 Sobic010G074200 Sobic007G227600--Sobic010G074200 Sobic009G253000 Sobic009G253000 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic002G163700 Sobic002G163700 Sobic007G227600--Sobic002G163700 Sobic003G068500--Sobic002G131000 Sobic001G252101 Sobic001G252101 Sobic003G068500--Sobic001G252101 Sobic007G090409 Sobic007G090409 Sobic003G068500--Sobic007G090409 Sobic006G276100 Sobic006G276100 Sobic003G068500--Sobic006G276100 Sobic007G043100 Sobic007G043100 Sobic003G068500--Sobic007G043100 Sobic006G025600 Sobic006G025600 Sobic003G068500--Sobic006G025600 Sobic003G068400 Sobic003G068400 Sobic003G068500--Sobic003G068400 Sobic002G044700 Sobic002G044700 Sobic003G068500--Sobic002G044700 Sobic008G189900 Sobic008G189900 Sobic003G068500--Sobic008G189900 Sobic003G356100--Sobic005G028900 Sobic004G144000 Sobic004G144000 Sobic003G356100--Sobic004G144000 Sobic003G356100--Sobic007G227600 Sobic003G356100--Sobic009G052700 Sobic003G356100--Sobic010G183400 Sobic003G356100--Sobic003G334100 Sobic004G250200 Sobic004G250200 Sobic003G356100--Sobic004G250200 Sobic004G252500 Sobic004G252500 Sobic003G356100--Sobic004G252500 Sobic006G214700 Sobic006G214700 Sobic003G356100--Sobic006G214700 Sobic010G074100--Sobic007G227600 Sobic010G074100--Sobic010G074200 Sobic010G074100--Sobic009G036300 Sobic010G074100--Sobic001G388400 Sobic010G074100--Sobic010G028000 Sobic009G233800 Sobic009G233800 Sobic010G074100--Sobic009G233800 Sobic010G074100--Sobic010G211500 Sobic010G074100--Sobic009G253000 Sobic009G062800 Sobic009G062800 Sobic010G074100--Sobic009G062800 Sobic005G028900--Sobic006G214700 Sobic005G028900--Sobic004G144000 Sobic005G028900--Sobic010G183400 Sobic005G028900--Sobic004G250200 Sobic003G439600 Sobic003G439600 Sobic005G028900--Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic005G028900--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic005G028900--Sobic003G179400 Sobic005G028900--Sobic007G227600 Sobic004G333400 Sobic004G333400 Sobic005G028900--Sobic004G333400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.