Gene annotation
Transcriptome id Sobic.003G068600.1
Synonym HCT, Sb03g005840
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transferase family protein, putative, expressed
UniProt A0A1B6Q1P9
Pfam PF02458
Panther DB PTHR31642 PTHR31642:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT5G48930 : hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
RAP-DB (Rice) LOC_Os08g43040.1 : transferase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023429 , Zm00025a023433 , Zm00025a023432 , Zm00025a023571 , Zm00025a023574 , Zm00025a023575
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
2 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
3 Sobic.003G422800 amino acid permease family protein, putative, expressed -
4 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
5 Sobic.002G163700 expressed protein -
6 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
7 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
8 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.003G174100 phosphoesterase family protein, putative, expressed -
10 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
11 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
12 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
13 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
14 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
15 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
16 Sobic.006G220600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
17 Sobic.001G388400 expressed protein -
18 Sobic.001G121100 integral membrane protein, putative, expressed -
19 Sobic.010G207500 homeobox protein knotted-1, putative, expressed -
20 Sobic.007G146700 DUF581 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G068600 Sobic003G068600 Sobic007G205600 Sobic007G205600 Sobic003G068600--Sobic007G205600 Sobic007G227600 Sobic007G227600 Sobic003G068600--Sobic007G227600 Sobic003G422800 Sobic003G422800 Sobic003G068600--Sobic003G422800 Sobic010G211500 Sobic010G211500 Sobic003G068600--Sobic010G211500 Sobic002G163700 Sobic002G163700 Sobic003G068600--Sobic002G163700 Sobic009G238100 Sobic009G238100 Sobic003G068600--Sobic009G238100 Sobic002G038300 Sobic002G038300 Sobic003G068600--Sobic002G038300 Sobic010G231100 Sobic010G231100 Sobic003G068600--Sobic010G231100 Sobic003G174100 Sobic003G174100 Sobic003G068600--Sobic003G174100 Sobic001G388400 Sobic001G388400 Sobic007G205600--Sobic001G388400 Sobic003G170200 Sobic003G170200 Sobic007G205600--Sobic003G170200 Sobic001G537700 Sobic001G537700 Sobic007G205600--Sobic001G537700 Sobic010G258300 Sobic010G258300 Sobic007G205600--Sobic010G258300 Sobic006G220600 Sobic006G220600 Sobic007G205600--Sobic006G220600 Sobic003G222600 Sobic003G222600 Sobic007G205600--Sobic003G222600 Sobic007G205600--Sobic010G211500 Sobic001G450600 Sobic001G450600 Sobic007G205600--Sobic001G450600 Sobic001G031300 Sobic001G031300 Sobic007G205600--Sobic001G031300 Sobic010G074100 Sobic010G074100 Sobic007G227600--Sobic010G074100 Sobic009G036300 Sobic009G036300 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic007G227600--Sobic009G234200 Sobic010G028000 Sobic010G028000 Sobic007G227600--Sobic010G028000 Sobic010G074200 Sobic010G074200 Sobic007G227600--Sobic010G074200 Sobic009G253000 Sobic009G253000 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic006G060601 Sobic006G060601 Sobic003G422800--Sobic006G060601 Sobic003G422800--Sobic006G220600 Sobic003G422800--Sobic003G068600 Sobic003G422800--Sobic002G163700 Sobic001G121100 Sobic001G121100 Sobic003G422800--Sobic001G121100 Sobic010G207500 Sobic010G207500 Sobic003G422800--Sobic010G207500 Sobic004G210900 Sobic004G210900 Sobic003G422800--Sobic004G210900 Sobic002G287000 Sobic002G287000 Sobic003G422800--Sobic002G287000 Sobic005G175500 Sobic005G175500 Sobic003G422800--Sobic005G175500 Sobic010G211500--Sobic007G227600 Sobic010G211500--Sobic009G036300 Sobic001G207200 Sobic001G207200 Sobic010G211500--Sobic001G207200 Sobic009G052700 Sobic009G052700 Sobic010G211500--Sobic009G052700 Sobic003G084500 Sobic003G084500 Sobic010G211500--Sobic003G084500 Sobic010G211500--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic010G211500--Sobic003G334100 Sobic010G183400 Sobic010G183400 Sobic010G211500--Sobic010G183400 Sobic010G211500--Sobic010G074100 Sobic003G439600 Sobic003G439600 Sobic002G163700--Sobic003G439600 Sobic002G163700--Sobic001G450600 Sobic002G163700--Sobic007G227600 Sobic006G214700 Sobic006G214700 Sobic002G163700--Sobic006G214700 Sobic002G250100 Sobic002G250100 Sobic002G163700--Sobic002G250100 Sobic006G197700 Sobic006G197700 Sobic002G163700--Sobic006G197700 Sobic002G386400 Sobic002G386400 Sobic002G163700--Sobic002G386400 Sobic002G163700--Sobic002G038300 Sobic003G245800 Sobic003G245800 Sobic002G163700--Sobic003G245800 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G238100--Sobic009G036300 Sobic003G030400 Sobic003G030400 Sobic009G238100--Sobic003G030400 Sobic009G238100--Sobic007G227600 Sobic009G238100--Sobic002G038300 Sobic002G038300--Sobic002G386400 Sobic001G161300 Sobic001G161300 Sobic002G038300--Sobic001G161300 Sobic002G038300--Sobic002G163700 Sobic002G038300--Sobic001G388400 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic003G208300 Sobic003G208300 Sobic002G038300--Sobic003G208300 Sobic002G038300--Sobic001G450600 Sobic002G038300--Sobic010G028000 Sobic003G179400 Sobic003G179400 Sobic010G231100--Sobic003G179400 Sobic010G231100--Sobic001G207200 Sobic010G231100--Sobic006G214700 Sobic005G028900 Sobic005G028900 Sobic010G231100--Sobic005G028900 Sobic010G231100--Sobic009G036300 Sobic009G079950 Sobic009G079950 Sobic010G231100--Sobic009G079950 Sobic009G141400 Sobic009G141400 Sobic010G231100--Sobic009G141400 Sobic006G024500 Sobic006G024500 Sobic010G231100--Sobic006G024500 Sobic010G231100--Sobic001G450600 Sobic003G174100--Sobic003G084500 Sobic003G174100--Sobic010G211500 Sobic003G174100--Sobic010G028000 Sobic003G174100--Sobic001G537700 Sobic004G248400 Sobic004G248400 Sobic003G174100--Sobic004G248400 Sobic003G174100--Sobic009G234200 Sobic003G174100--Sobic003G179400 Sobic003G174100--Sobic007G205600 Sobic003G174100--Sobic001G450600
Octagon: transcription factors


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