Gene annotation
Transcriptome id Sobic.003G222600.1
Synonym Sb03g028090
Functional annotation similar to DEAD-box ATP-dependent RNA helicase 25 (PubMedID : 29862293)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
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UniProt C5XR34
Pfam PF00271 PF04851
Panther DB PTHR24031:SF275 PTHR24031
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0005524ATP binding GO:0016787hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G08610 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g43120.1 : DEAD/DEAH box helicase, putative, expressed
MaizeGDB (Corn) Zm00025a028395 , Zm00025a028394
Brachypodium KQK08755 , KQK08754 , PNT72400
Barley HORVU3Hr1G054730.5 , HORVU3Hr1G054730.6 , HORVU3Hr1G054730.7 , HORVU3Hr1G054730.4 , HORVU3Hr1G054730.2 , HORVU3Hr1G054730.3 , HORVU3Hr1G054730.1 , HORVU3Hr1G054730.8
Wheat TraesCS3D02G230300 , TraesCS3D02G230400 , TraesCS3D02G230400 , TraesCS3B02G252600 , TraesCS3A02G222700 , TraesCS3A02G222500 , TraesCS3B02G252700 , TraesCS3B02G252700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
2 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
3 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
4 Sobic.010G258300 integral membrane protein, putative, expressed -
5 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
6 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
7 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
8 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
9 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
10 Sobic.003G039300 expressed protein -
11 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
12 Sobic.007G069400 pentatricopeptide, putative, expressed -
13 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
14 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
15 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
16 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
17 Sobic.007G110200 wound responsive protein, putative, expressed -
18 Sobic.007G131200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G243650 - K00784: ribonuclease Z
20 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G222600 Sobic003G222600 Sobic003G030400 Sobic003G030400 Sobic003G222600--Sobic003G030400 Sobic008G148400 Sobic008G148400 Sobic003G222600--Sobic008G148400 Sobic001G114400 Sobic001G114400 Sobic003G222600--Sobic001G114400 Sobic010G258300 Sobic010G258300 Sobic003G222600--Sobic010G258300 Sobic004G070200 Sobic004G070200 Sobic003G222600--Sobic004G070200 Sobic009G137000 Sobic009G137000 Sobic003G222600--Sobic009G137000 Sobic007G205600 Sobic007G205600 Sobic003G222600--Sobic007G205600 Sobic009G233800 Sobic009G233800 Sobic003G222600--Sobic009G233800 Sobic009G036300 Sobic009G036300 Sobic003G222600--Sobic009G036300 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic009G238100 Sobic009G238100 Sobic003G030400--Sobic009G238100 Sobic003G030400--Sobic009G137000 Sobic003G030400--Sobic001G114400 Sobic003G030400--Sobic004G070200 Sobic004G249500 Sobic004G249500 Sobic003G030400--Sobic004G249500 Sobic008G148400--Sobic009G238100 Sobic001G426400 Sobic001G426400 Sobic008G148400--Sobic001G426400 Sobic008G148400--Sobic003G030400 Sobic008G148400--Sobic003G222600 Sobic001G423100 Sobic001G423100 Sobic008G148400--Sobic001G423100 Sobic009G154600 Sobic009G154600 Sobic008G148400--Sobic009G154600 Sobic007G131200 Sobic007G131200 Sobic008G148400--Sobic007G131200 Sobic008G148400--Sobic009G233800 Sobic006G265400 Sobic006G265400 Sobic008G148400--Sobic006G265400 Sobic001G114400--Sobic003G222600 Sobic002G191100 Sobic002G191100 Sobic001G114400--Sobic002G191100 Sobic001G114400--Sobic003G030400 Sobic001G114400--Sobic009G036300 Sobic001G114400--Sobic004G070200 Sobic001G114400--Sobic008G148400 Sobic010G039200 Sobic010G039200 Sobic001G114400--Sobic010G039200 Sobic003G324100 Sobic003G324100 Sobic001G114400--Sobic003G324100 Sobic010G211500 Sobic010G211500 Sobic001G114400--Sobic010G211500 Sobic003G222300 Sobic003G222300 Sobic010G258300--Sobic003G222300 Sobic007G110200 Sobic007G110200 Sobic010G258300--Sobic007G110200 Sobic001G031300 Sobic001G031300 Sobic010G258300--Sobic001G031300 Sobic010G258300--Sobic003G222600 Sobic010G258300--Sobic007G205600 Sobic010G258300--Sobic009G154600 Sobic003G170200 Sobic003G170200 Sobic010G258300--Sobic003G170200 Sobic004G011566 Sobic004G011566 Sobic010G258300--Sobic004G011566 Sobic010G258300--Sobic003G030400 Sobic004G070200--Sobic003G222600 Sobic004G070200--Sobic003G030400 Sobic004G070200--Sobic007G131200 Sobic002G172600 Sobic002G172600 Sobic004G070200--Sobic002G172600 Sobic006G110200 Sobic006G110200 Sobic004G070200--Sobic006G110200 Sobic004G070200--Sobic009G137000 Sobic004G070200--Sobic001G114400 Sobic004G070200--Sobic002G191100 Sobic001G246200 Sobic001G246200 Sobic004G070200--Sobic001G246200 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic002G404900 Sobic002G404900 Sobic009G137000--Sobic002G404900 Sobic003G039300 Sobic003G039300 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G137000--Sobic009G233800 Sobic009G137000--Sobic003G222600 Sobic009G137000--Sobic006G110200 Sobic006G237100 Sobic006G237100 Sobic009G137000--Sobic006G237100 Sobic009G137000--Sobic003G030400 Sobic001G388400 Sobic001G388400 Sobic007G205600--Sobic001G388400 Sobic007G205600--Sobic003G170200 Sobic001G537700 Sobic001G537700 Sobic007G205600--Sobic001G537700 Sobic007G205600--Sobic010G258300 Sobic006G220600 Sobic006G220600 Sobic007G205600--Sobic006G220600 Sobic007G205600--Sobic003G222600 Sobic007G205600--Sobic010G211500 Sobic001G450600 Sobic001G450600 Sobic007G205600--Sobic001G450600 Sobic007G205600--Sobic001G031300 Sobic010G074200 Sobic010G074200 Sobic009G233800--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G233800--Sobic006G204100 Sobic009G233800--Sobic001G388400 Sobic004G055600 Sobic004G055600 Sobic009G233800--Sobic004G055600 Sobic009G233800--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic009G233800--Sobic010G074100 Sobic009G233800--Sobic009G137000 Sobic009G233800--Sobic001G076200 Sobic010G028000 Sobic010G028000 Sobic009G233800--Sobic010G028000 Sobic007G227600 Sobic007G227600 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic009G036300--Sobic010G074100 Sobic009G036300--Sobic010G211500 Sobic009G234200 Sobic009G234200 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700
Octagon: transcription factors


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