Gene annotation
Transcriptome id Sobic.002G243650.1
Synonym -
Functional annotation -
UniProt A0A1W0W5J5
Pfam PF12706
Panther DB PTHR12553 PTHR12553:SF37
NCBI CDD -
KEGG Orthology K00784; ribonuclease Z
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G04530 : Metallo-hydrolase/oxidoreductase superfamily protein
RAP-DB (Rice) LOC_Os09g30466.1 : nuclear ribonuclease Z, putative, expressed
MaizeGDB (Corn) Zm00025a047413
Brachypodium KQJ90713
Barley -
Wheat TraesCS5A02G261000 , TraesCS5B02G259400 , TraesCS5B02G259400 , TraesCS5B02G259400 , TraesCS6B02G129000 , TraesCS6B02G129000 , TraesCS5D02G268500 , TraesCS5D02G268500 , TraesCS5D02G268500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
2 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
3 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
4 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
5 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
6 Sobic.003G039300 expressed protein -
7 Sobic.003G404400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized RNA methyltransferase pc1998, putative, expressed -
8 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
9 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
10 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.010G074200 - -
12 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
13 Sobic.003G075100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
14 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
15 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
16 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
17 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
18 Sobic.001G388400 expressed protein -
19 Sobic.004G276500 expressed protein K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
20 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -


Gene co-expression network
sample Sobic002G243650 Sobic002G243650 Sobic009G137000 Sobic009G137000 Sobic002G243650--Sobic009G137000 Sobic009G233800 Sobic009G233800 Sobic002G243650--Sobic009G233800 Sobic003G030400 Sobic003G030400 Sobic002G243650--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic002G243650--Sobic010G074100 Sobic003G222600 Sobic003G222600 Sobic002G243650--Sobic003G222600 Sobic003G039300 Sobic003G039300 Sobic002G243650--Sobic003G039300 Sobic003G404400 Sobic003G404400 Sobic002G243650--Sobic003G404400 Sobic006G110200 Sobic006G110200 Sobic002G243650--Sobic006G110200 Sobic001G537700 Sobic001G537700 Sobic002G243650--Sobic001G537700 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic002G404900 Sobic002G404900 Sobic009G137000--Sobic002G404900 Sobic009G137000--Sobic003G039300 Sobic009G137000--Sobic002G243650 Sobic009G137000--Sobic009G233800 Sobic009G137000--Sobic003G222600 Sobic009G137000--Sobic006G110200 Sobic006G237100 Sobic006G237100 Sobic009G137000--Sobic006G237100 Sobic009G137000--Sobic003G030400 Sobic010G074200 Sobic010G074200 Sobic009G233800--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G233800--Sobic006G204100 Sobic001G388400 Sobic001G388400 Sobic009G233800--Sobic001G388400 Sobic004G055600 Sobic004G055600 Sobic009G233800--Sobic004G055600 Sobic009G233800--Sobic003G030400 Sobic009G233800--Sobic010G074100 Sobic009G233800--Sobic009G137000 Sobic001G076200 Sobic001G076200 Sobic009G233800--Sobic001G076200 Sobic010G028000 Sobic010G028000 Sobic009G233800--Sobic010G028000 Sobic003G030400--Sobic003G222600 Sobic008G148400 Sobic008G148400 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic003G030400--Sobic001G076200 Sobic009G238100 Sobic009G238100 Sobic003G030400--Sobic009G238100 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic004G249500 Sobic004G249500 Sobic003G030400--Sobic004G249500 Sobic007G227600 Sobic007G227600 Sobic010G074100--Sobic007G227600 Sobic010G074100--Sobic010G074200 Sobic009G036300 Sobic009G036300 Sobic010G074100--Sobic009G036300 Sobic010G074100--Sobic001G388400 Sobic010G074100--Sobic010G028000 Sobic010G074100--Sobic009G233800 Sobic010G211500 Sobic010G211500 Sobic010G074100--Sobic010G211500 Sobic009G253000 Sobic009G253000 Sobic010G074100--Sobic009G253000 Sobic009G062800 Sobic009G062800 Sobic010G074100--Sobic009G062800 Sobic003G222600--Sobic003G030400 Sobic003G222600--Sobic008G148400 Sobic003G222600--Sobic001G114400 Sobic010G258300 Sobic010G258300 Sobic003G222600--Sobic010G258300 Sobic003G222600--Sobic004G070200 Sobic003G222600--Sobic009G137000 Sobic007G205600 Sobic007G205600 Sobic003G222600--Sobic007G205600 Sobic003G222600--Sobic009G233800 Sobic003G222600--Sobic009G036300 Sobic003G039300--Sobic006G110200 Sobic003G084500 Sobic003G084500 Sobic003G039300--Sobic003G084500 Sobic007G069400 Sobic007G069400 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic003G039300--Sobic001G537700 Sobic003G039300--Sobic009G137000 Sobic003G039300--Sobic010G211500 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic003G404400--Sobic010G074100 Sobic003G404400--Sobic009G233800 Sobic003G404400--Sobic010G028000 Sobic003G404400--Sobic007G227600 Sobic003G404400--Sobic001G388400 Sobic003G404400--Sobic006G204100 Sobic009G234200 Sobic009G234200 Sobic003G404400--Sobic009G234200 Sobic003G404400--Sobic010G074200 Sobic003G404400--Sobic009G253000 Sobic006G110200--Sobic003G039300 Sobic006G110200--Sobic007G069400 Sobic002G140000 Sobic002G140000 Sobic006G110200--Sobic002G140000 Sobic006G110200--Sobic001G537700 Sobic006G110200--Sobic009G137000 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300 Sobic001G537700--Sobic003G039300 Sobic001G537700--Sobic001G076200 Sobic001G537700--Sobic006G110200 Sobic001G537700--Sobic007G205600 Sobic001G537700--Sobic007G069400 Sobic001G537700--Sobic001G388400 Sobic001G537700--Sobic009G233800 Sobic001G537700--Sobic010G028000 Sobic002G114700 Sobic002G114700 Sobic001G537700--Sobic002G114700
Octagon: transcription factors


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