Gene annotation
Transcriptome id Sobic.003G039300.1
Synonym RH39, Sb03g003520
Functional annotation expressed protein
UniProt C5XML6
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF247
NCBI CDD KOG0331; ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G09730 : RH39
RAP-DB (Rice) LOC_Os01g08930.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a041406
Brachypodium KQK03075 , PNT70101
Barley -
Wheat TraesCS3A02G112800 , TraesCS3A02G112800 , TraesCS3B02G131400
Populus -


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cDNA sequences
Sobic.003G039300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
2 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
3 Sobic.007G069400 pentatricopeptide, putative, expressed -
4 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
5 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
6 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
7 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
8 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
9 Sobic.007G015300 calreticulin family protein, expressed -
10 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
11 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
12 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
13 Sobic.003G162800 expressed protein -
14 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
15 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
16 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
17 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
18 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -


Gene co-expression network
sample Sobic003G039300 Sobic003G039300 Sobic006G110200 Sobic006G110200 Sobic003G039300--Sobic006G110200 Sobic003G084500 Sobic003G084500 Sobic003G039300--Sobic003G084500 Sobic007G069400 Sobic007G069400 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic001G537700 Sobic001G537700 Sobic003G039300--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic003G039300--Sobic009G137000 Sobic010G211500 Sobic010G211500 Sobic003G039300--Sobic010G211500 Sobic006G237100 Sobic006G237100 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic006G110200--Sobic003G039300 Sobic006G110200--Sobic007G069400 Sobic002G140000 Sobic002G140000 Sobic006G110200--Sobic002G140000 Sobic006G110200--Sobic001G537700 Sobic006G110200--Sobic009G137000 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300 Sobic004G333400 Sobic004G333400 Sobic003G084500--Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic003G084500--Sobic003G334100 Sobic001G450600 Sobic001G450600 Sobic003G084500--Sobic001G450600 Sobic009G234200 Sobic009G234200 Sobic003G084500--Sobic009G234200 Sobic003G286300 Sobic003G286300 Sobic003G084500--Sobic003G286300 Sobic003G444500 Sobic003G444500 Sobic003G084500--Sobic003G444500 Sobic010G183400 Sobic010G183400 Sobic003G084500--Sobic010G183400 Sobic002G131700 Sobic002G131700 Sobic003G084500--Sobic002G131700 Sobic001G054100 Sobic001G054100 Sobic003G084500--Sobic001G054100 Sobic007G069400--Sobic003G039300 Sobic001G037500 Sobic001G037500 Sobic007G069400--Sobic001G037500 Sobic007G069400--Sobic006G110200 Sobic006G273400 Sobic006G273400 Sobic007G069400--Sobic006G273400 Sobic009G127400 Sobic009G127400 Sobic007G069400--Sobic009G127400 Sobic002G114700 Sobic002G114700 Sobic007G069400--Sobic002G114700 Sobic003G162800 Sobic003G162800 Sobic007G069400--Sobic003G162800 Sobic007G069400--Sobic001G054100 Sobic007G069400--Sobic001G537700 Sobic001G161400--Sobic006G237100 Sobic001G161400--Sobic003G039300 Sobic006G204100 Sobic006G204100 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic002G404900 Sobic002G404900 Sobic001G161400--Sobic002G404900 Sobic001G161400--Sobic003G444500 Sobic001G161400--Sobic009G234200 Sobic001G161400--Sobic003G084500 Sobic001G161400--Sobic003G286300 Sobic001G537700--Sobic003G039300 Sobic001G076200 Sobic001G076200 Sobic001G537700--Sobic001G076200 Sobic001G537700--Sobic006G110200 Sobic007G205600 Sobic007G205600 Sobic001G537700--Sobic007G205600 Sobic001G537700--Sobic007G069400 Sobic001G388400 Sobic001G388400 Sobic001G537700--Sobic001G388400 Sobic009G233800 Sobic009G233800 Sobic001G537700--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic001G537700--Sobic010G028000 Sobic001G537700--Sobic002G114700 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic009G137000--Sobic002G404900 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic009G137000--Sobic006G110200 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic010G211500--Sobic007G227600 Sobic009G036300 Sobic009G036300 Sobic010G211500--Sobic009G036300 Sobic001G207200 Sobic001G207200 Sobic010G211500--Sobic001G207200 Sobic009G052700 Sobic009G052700 Sobic010G211500--Sobic009G052700 Sobic010G211500--Sobic003G084500 Sobic010G211500--Sobic001G450600 Sobic010G211500--Sobic003G334100 Sobic010G211500--Sobic010G183400 Sobic010G074100 Sobic010G074100 Sobic010G211500--Sobic010G074100 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic001G375000 Sobic001G375000 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic001G099000 Sobic001G099000 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400
Octagon: transcription factors


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