Gene annotation
Transcriptome id Sobic.006G110200.2,Sobic.006G110200.1
Synonym CFM2, ATCFM2, Sb06g019250
Functional annotation CRS1/YhbY domain containing protein, expressed
UniProt A0A1Z5RD84 , A0A1B6PLE0
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF12
NCBI CDD KOG1990; Poly(A)-specific exoribonuclease PARN
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G01370 : CRM family member 2
RAP-DB (Rice) LOC_Os04g39060.2 : CRS1/YhbY domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056238
Brachypodium KQJ83016 , KQJ83021 , KQJ83020 , KQJ83017 , KQJ83018 , KQJ83019
Barley HORVU2Hr1G081140.18 , HORVU2Hr1G081140.19 , HORVU2Hr1G081140.14 , HORVU2Hr1G081140.15 , HORVU2Hr1G081140.16 , HORVU2Hr1G081140.17 , HORVU2Hr1G081140.10 , HORVU2Hr1G081140.11 , HORVU2Hr1G081140.12 , HORVU2Hr1G081140.13 , HORVU2Hr1G081140.21 , HORVU2Hr1G081140.20 , HORVU2Hr1G081140.23 , HORVU2Hr1G081140.22 , HORVU2Hr1G081140.6 , HORVU2Hr1G081140.7 , HORVU2Hr1G081140.4 , HORVU2Hr1G081140.5 , HORVU2Hr1G081140.2 , HORVU2Hr1G081140.3 , HORVU2Hr1G081140.1 , HORVU2Hr1G081140.8 , HORVU2Hr1G081140.9
Wheat TraesCS2D02G327400 , TraesCS2D02G327400 , TraesCS2D02G327400 , TraesCS2B02G346500 , TraesCS2B02G346500 , TraesCS2B02G346500 , TraesCS2B02G346500 , TraesCS2A02G335400 , TraesCS2A02G335400 , TraesCS2A02G335400 , TraesCS2A02G335400
Populus -


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cDNA sequences
Sobic.006G110200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G039300 expressed protein -
2 Sobic.007G069400 pentatricopeptide, putative, expressed -
3 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
4 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
5 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
6 Sobic.007G015300 calreticulin family protein, expressed -
7 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
8 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.001G228300 SAP domain containing protein, expressed -
10 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
11 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
12 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
13 Sobic.005G022800 GTP binding protein, putative, expressed -
14 Sobic.003G162800 expressed protein -
15 Sobic.004G190900 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
16 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
17 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
18 Sobic.001G099000 expressed protein -
19 Sobic.007G116100 thioredoxin, putative, expressed -
20 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme


Gene co-expression network
sample Sobic006G110200 Sobic006G110200 Sobic003G039300 Sobic003G039300 Sobic006G110200--Sobic003G039300 Sobic007G069400 Sobic007G069400 Sobic006G110200--Sobic007G069400 Sobic002G140000 Sobic002G140000 Sobic006G110200--Sobic002G140000 Sobic001G537700 Sobic001G537700 Sobic006G110200--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic006G110200--Sobic009G137000 Sobic007G015300 Sobic007G015300 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300 Sobic003G039300--Sobic006G110200 Sobic003G084500 Sobic003G084500 Sobic003G039300--Sobic003G084500 Sobic003G039300--Sobic007G069400 Sobic001G161400 Sobic001G161400 Sobic003G039300--Sobic001G161400 Sobic003G039300--Sobic001G537700 Sobic003G039300--Sobic009G137000 Sobic010G211500 Sobic010G211500 Sobic003G039300--Sobic010G211500 Sobic006G237100 Sobic006G237100 Sobic003G039300--Sobic006G237100 Sobic003G039300--Sobic007G015300 Sobic007G069400--Sobic003G039300 Sobic001G037500 Sobic001G037500 Sobic007G069400--Sobic001G037500 Sobic007G069400--Sobic006G110200 Sobic006G273400 Sobic006G273400 Sobic007G069400--Sobic006G273400 Sobic009G127400 Sobic009G127400 Sobic007G069400--Sobic009G127400 Sobic002G114700 Sobic002G114700 Sobic007G069400--Sobic002G114700 Sobic003G162800 Sobic003G162800 Sobic007G069400--Sobic003G162800 Sobic001G054100 Sobic001G054100 Sobic007G069400--Sobic001G054100 Sobic007G069400--Sobic001G537700 Sobic002G140000--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic001G537700--Sobic003G039300 Sobic001G076200 Sobic001G076200 Sobic001G537700--Sobic001G076200 Sobic001G537700--Sobic006G110200 Sobic007G205600 Sobic007G205600 Sobic001G537700--Sobic007G205600 Sobic001G537700--Sobic007G069400 Sobic001G388400 Sobic001G388400 Sobic001G537700--Sobic001G388400 Sobic009G233800 Sobic009G233800 Sobic001G537700--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic001G537700--Sobic010G028000 Sobic001G537700--Sobic002G114700 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic002G404900 Sobic002G404900 Sobic009G137000--Sobic002G404900 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic009G137000--Sobic006G110200 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic002G045700--Sobic002G140000 Sobic002G045700--Sobic004G338300 Sobic002G045700--Sobic001G228300 Sobic009G251000 Sobic009G251000 Sobic002G045700--Sobic009G251000 Sobic002G045700--Sobic007G015300 Sobic002G045700--Sobic010G027200 Sobic002G045700--Sobic006G110200 Sobic002G045700--Sobic007G116100 Sobic010G011200 Sobic010G011200 Sobic002G045700--Sobic010G011200 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic001G228300--Sobic001G395300 Sobic001G228300--Sobic002G045700 Sobic001G138000 Sobic001G138000 Sobic001G228300--Sobic001G138000 Sobic001G228300--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G228300--Sobic003G392000 Sobic001G228300--Sobic007G116100 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic001G228300--Sobic006G110200
Octagon: transcription factors


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