Gene annotation
Transcriptome id Sobic.003G404400.2,Sobic.003G404400.3,Sobic.003G404400.1
Synonym Sb03g044000
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized RNA methyltransferase pc1998, putative, expressed
UniProt A0A1W0W158 , C5XGA0
Pfam PF03602
Panther DB PTHR11061 PTHR11061:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G27180 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os01g69120.1 : uncharacterized RNA methyltransferase pc1998, putative, expressed
MaizeGDB (Corn) Zm00025a039302
Brachypodium KQK11241
Barley -
Wheat TraesCS3D02G423300 , TraesCS2D02G160800
Populus -


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cDNA sequences
Sobic.003G404400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
2 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
3 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
4 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
5 Sobic.001G388400 expressed protein -
6 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
7 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
8 Sobic.010G074200 - -
9 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
10 Sobic.002G250100 dehydrogenase, putative, expressed -
11 Sobic.009G138900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G243650 - K00784: ribonuclease Z
13 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
15 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
16 Sobic.010G082800 calvin cycle protein CP12, putative, expressed -
17 Sobic.002G004000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
18 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
19 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G404400 Sobic003G404400 Sobic010G074100 Sobic010G074100 Sobic003G404400--Sobic010G074100 Sobic009G233800 Sobic009G233800 Sobic003G404400--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic003G404400--Sobic010G028000 Sobic007G227600 Sobic007G227600 Sobic003G404400--Sobic007G227600 Sobic001G388400 Sobic001G388400 Sobic003G404400--Sobic001G388400 Sobic006G204100 Sobic006G204100 Sobic003G404400--Sobic006G204100 Sobic009G234200 Sobic009G234200 Sobic003G404400--Sobic009G234200 Sobic010G074200 Sobic010G074200 Sobic003G404400--Sobic010G074200 Sobic009G253000 Sobic009G253000 Sobic003G404400--Sobic009G253000 Sobic010G074100--Sobic007G227600 Sobic010G074100--Sobic010G074200 Sobic009G036300 Sobic009G036300 Sobic010G074100--Sobic009G036300 Sobic010G074100--Sobic001G388400 Sobic010G074100--Sobic010G028000 Sobic010G074100--Sobic009G233800 Sobic010G211500 Sobic010G211500 Sobic010G074100--Sobic010G211500 Sobic010G074100--Sobic009G253000 Sobic009G062800 Sobic009G062800 Sobic010G074100--Sobic009G062800 Sobic009G233800--Sobic010G074200 Sobic009G233800--Sobic006G204100 Sobic009G233800--Sobic001G388400 Sobic004G055600 Sobic004G055600 Sobic009G233800--Sobic004G055600 Sobic003G030400 Sobic003G030400 Sobic009G233800--Sobic003G030400 Sobic009G233800--Sobic010G074100 Sobic009G137000 Sobic009G137000 Sobic009G233800--Sobic009G137000 Sobic001G076200 Sobic001G076200 Sobic009G233800--Sobic001G076200 Sobic009G233800--Sobic010G028000 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G028000--Sobic010G074200 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic003G330100 Sobic003G330100 Sobic010G028000--Sobic003G330100 Sobic003G245800 Sobic003G245800 Sobic010G028000--Sobic003G245800 Sobic010G183400 Sobic010G183400 Sobic010G028000--Sobic010G183400 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic007G227600--Sobic009G234200 Sobic007G227600--Sobic010G028000 Sobic007G227600--Sobic010G074200 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic002G163700 Sobic002G163700 Sobic007G227600--Sobic002G163700 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic001G388400--Sobic009G036300 Sobic001G388400--Sobic010G074200 Sobic001G388400--Sobic007G227600 Sobic001G388400--Sobic006G204100 Sobic001G388400--Sobic009G253000 Sobic001G388400--Sobic009G233800 Sobic002G250100 Sobic002G250100 Sobic001G388400--Sobic002G250100 Sobic006G204100--Sobic010G074200 Sobic008G072300 Sobic008G072300 Sobic006G204100--Sobic008G072300 Sobic006G204100--Sobic001G388400 Sobic006G204100--Sobic009G234200 Sobic006G204100--Sobic003G330100 Sobic006G204100--Sobic009G233800 Sobic006G204100--Sobic010G028000 Sobic006G204100--Sobic007G227600 Sobic004G250200 Sobic004G250200 Sobic006G204100--Sobic004G250200 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic010G074200--Sobic006G204100 Sobic010G074200--Sobic010G074100 Sobic010G074200--Sobic001G388400 Sobic010G074200--Sobic009G233800 Sobic010G074200--Sobic009G036300 Sobic010G074200--Sobic010G028000 Sobic010G074200--Sobic007G227600 Sobic010G074200--Sobic009G234200 Sobic010G074200--Sobic003G330100 Sobic009G253000--Sobic001G388400 Sobic009G253000--Sobic007G227600 Sobic009G238100 Sobic009G238100 Sobic009G253000--Sobic009G238100 Sobic009G253000--Sobic010G074100 Sobic009G253000--Sobic009G036300 Sobic009G253000--Sobic010G028000 Sobic009G253000--Sobic009G233800 Sobic009G253000--Sobic010G074200 Sobic009G253000--Sobic006G204100
Octagon: transcription factors


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