Gene annotation
Transcriptome id Sobic.002G004000.2
Synonym PQL2, Sb02g000550, PQL1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxygen evolving enhancer protein 3 domain containing protein, expressed
UniProt C5X752
Pfam PF05757
Panther DB PTHR33399 PTHR33399:SF2
NCBI CDD -
KEGG Orthology K08901; photosystem II oxygen-evolving enhancer protein 3
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G01440 : PsbQ-like 1
RAP-DB (Rice) LOC_Os07g01480.2 : oxygen evolving enhancer protein 3 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044849
Brachypodium KQK21224
Barley HORVU2Hr1G080260.3 , HORVU2Hr1G080260.1 , HORVU2Hr1G080260.2 , HORVU2Hr1G080260.4
Wheat TraesCS2D02G322700 , TraesCS2B02G342000 , TraesCS5D02G474200 , TraesCS5A02G461500 , TraesCS5B02G471700 , TraesCS2A02G344400
Populus -


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cDNA sequences
Sobic.002G004000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G055600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide containing protein, putative, expressed -
2 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
3 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
4 Sobic.004G017200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
7 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
8 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
9 Sobic.001G333000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
11 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
12 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
13 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
14 Sobic.009G136900 peptide transporter PTR2, putative, expressed -
15 Sobic.004G314800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
18 Sobic.001G388400 expressed protein -
19 Sobic.001G407900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
20 Sobic.010G116500 expressed protein -


Gene co-expression network
sample Sobic002G004000 Sobic002G004000 Sobic004G055600 Sobic004G055600 Sobic002G004000--Sobic004G055600 Sobic006G204100 Sobic006G204100 Sobic002G004000--Sobic006G204100 Sobic001G120000 Sobic001G120000 Sobic002G004000--Sobic001G120000 Sobic004G017200 Sobic004G017200 Sobic002G004000--Sobic004G017200 Sobic003G030900 Sobic003G030900 Sobic002G004000--Sobic003G030900 Sobic001G240000 Sobic001G240000 Sobic002G004000--Sobic001G240000 Sobic002G305700 Sobic002G305700 Sobic002G004000--Sobic002G305700 Sobic003G221700 Sobic003G221700 Sobic002G004000--Sobic003G221700 Sobic001G333000 Sobic001G333000 Sobic002G004000--Sobic001G333000 Sobic009G233800 Sobic009G233800 Sobic004G055600--Sobic009G233800 Sobic004G055600--Sobic002G004000 Sobic001G076200 Sobic001G076200 Sobic004G055600--Sobic001G076200 Sobic001G255400 Sobic001G255400 Sobic004G055600--Sobic001G255400 Sobic009G136900 Sobic009G136900 Sobic004G055600--Sobic009G136900 Sobic001G388400 Sobic001G388400 Sobic004G055600--Sobic001G388400 Sobic009G253000 Sobic009G253000 Sobic004G055600--Sobic009G253000 Sobic008G177850 Sobic008G177850 Sobic004G055600--Sobic008G177850 Sobic008G101500 Sobic008G101500 Sobic004G055600--Sobic008G101500 Sobic010G074200 Sobic010G074200 Sobic006G204100--Sobic010G074200 Sobic008G072300 Sobic008G072300 Sobic006G204100--Sobic008G072300 Sobic006G204100--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic006G204100--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic006G204100--Sobic003G330100 Sobic006G204100--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic006G204100--Sobic010G028000 Sobic007G227600 Sobic007G227600 Sobic006G204100--Sobic007G227600 Sobic004G250200 Sobic004G250200 Sobic006G204100--Sobic004G250200 Sobic004G044000 Sobic004G044000 Sobic001G120000--Sobic004G044000 Sobic004G191200 Sobic004G191200 Sobic001G120000--Sobic004G191200 Sobic002G190800 Sobic002G190800 Sobic001G120000--Sobic002G190800 Sobic006G263800 Sobic006G263800 Sobic001G120000--Sobic006G263800 Sobic002G190100 Sobic002G190100 Sobic001G120000--Sobic002G190100 Sobic001G120000--Sobic004G017200 Sobic001G120000--Sobic002G305700 Sobic001G027600 Sobic001G027600 Sobic001G120000--Sobic001G027600 Sobic001G120000--Sobic001G255400 Sobic002G343700 Sobic002G343700 Sobic004G017200--Sobic002G343700 Sobic004G017200--Sobic004G044000 Sobic004G017200--Sobic001G120000 Sobic004G017200--Sobic001G027600 Sobic004G017200--Sobic003G030900 Sobic001G076500 Sobic001G076500 Sobic004G017200--Sobic001G076500 Sobic001G427000 Sobic001G427000 Sobic004G017200--Sobic001G427000 Sobic006G280050 Sobic006G280050 Sobic004G017200--Sobic006G280050 Sobic003G095000 Sobic003G095000 Sobic004G017200--Sobic003G095000 Sobic003G030900--Sobic001G027600 Sobic003G030900--Sobic004G044000 Sobic006G248200 Sobic006G248200 Sobic003G030900--Sobic006G248200 Sobic001G040000 Sobic001G040000 Sobic003G030900--Sobic001G040000 Sobic003G030900--Sobic001G240000 Sobic007G013400 Sobic007G013400 Sobic003G030900--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic003G030900--Sobic002G242600 Sobic004G317900 Sobic004G317900 Sobic003G030900--Sobic004G317900 Sobic001G531200 Sobic001G531200 Sobic003G030900--Sobic001G531200 Sobic001G527100 Sobic001G527100 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G122400 Sobic001G122400 Sobic001G240000--Sobic001G122400 Sobic003G386300 Sobic003G386300 Sobic001G240000--Sobic003G386300 Sobic001G391400 Sobic001G391400 Sobic001G240000--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic001G240000--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G240000--Sobic004G335800 Sobic003G328200 Sobic003G328200 Sobic001G240000--Sobic003G328200 Sobic002G198000 Sobic002G198000 Sobic001G240000--Sobic002G198000 Sobic001G191000 Sobic001G191000 Sobic002G305700--Sobic001G191000 Sobic002G305700--Sobic001G333000 Sobic003G256200 Sobic003G256200 Sobic002G305700--Sobic003G256200 Sobic006G107600 Sobic006G107600 Sobic002G305700--Sobic006G107600 Sobic002G305700--Sobic004G191200 Sobic002G305700--Sobic006G280050 Sobic002G305700--Sobic006G248200 Sobic009G212000 Sobic009G212000 Sobic002G305700--Sobic009G212000 Sobic002G305700--Sobic001G240000 Sobic003G221700--Sobic001G333000 Sobic006G111600 Sobic006G111600 Sobic003G221700--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic003G221700--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic003G221700--Sobic002G131700 Sobic003G245800 Sobic003G245800 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic001G333000--Sobic003G221700 Sobic001G333000--Sobic002G305700 Sobic001G333000--Sobic001G531200 Sobic010G095200 Sobic010G095200 Sobic001G333000--Sobic010G095200 Sobic001G333000--Sobic006G248200 Sobic001G333000--Sobic001G240000 Sobic001G333000--Sobic003G386300 Sobic001G333000--Sobic002G251400 Sobic002G297400 Sobic002G297400 Sobic001G333000--Sobic002G297400
Octagon: transcription factors


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