Gene annotation
Transcriptome id Sobic.004G098000.3,Sobic.004G098000.2,Sobic.004G098000.4
Synonym Sb04g008060
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5RLP8 , A0A1Z5RLP6 , A0A1Z5RMH2
Pfam PF08282 PF02130
Panther DB PTHR10000 PTHR10000:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006364; rRNA processing GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT2G25870 : haloacid dehalogenase-like hydrolase family protein
RAP-DB (Rice) LOC_Os02g13360.1 : expressed protein
MaizeGDB (Corn) Zm00025a020128
Brachypodium KQJ94117 , KQJ94116
Barley HORVU2Hr1G109960.44 , HORVU2Hr1G109960.45 , HORVU2Hr1G109960.47 , HORVU2Hr1G109960.40 , HORVU2Hr1G109960.41 , HORVU2Hr1G109960.42 , HORVU2Hr1G109960.43 , HORVU2Hr1G109960.48 , HORVU2Hr1G109960.49 , HORVU2Hr1G109960.19 , HORVU2Hr1G109960.18 , HORVU2Hr1G109960.13 , HORVU2Hr1G109960.12 , HORVU2Hr1G109960.11 , HORVU2Hr1G109960.10 , HORVU2Hr1G109960.17 , HORVU2Hr1G109960.16 , HORVU2Hr1G109960.15 , HORVU2Hr1G109960.14 , HORVU2Hr1G109960.9 , HORVU2Hr1G109960.8 , HORVU2Hr1G109960.3 , HORVU2Hr1G109960.2 , HORVU2Hr1G109960.1 , HORVU2Hr1G109960.7 , HORVU2Hr1G109960.6 , HORVU2Hr1G109960.5 , HORVU2Hr1G109960.4 , HORVU2Hr1G109960.39 , HORVU2Hr1G109960.35 , HORVU2Hr1G109960.34 , HORVU2Hr1G109960.37 , HORVU2Hr1G109960.36 , HORVU2Hr1G109960.31 , HORVU2Hr1G109960.30 , HORVU2Hr1G109960.33 , HORVU2Hr1G109960.32 , HORVU2Hr1G109960.20 , HORVU2Hr1G109960.21 , HORVU2Hr1G109960.26 , HORVU2Hr1G109960.27 , HORVU2Hr1G109960.24 , HORVU2Hr1G109960.25 , HORVU2Hr1G109960.28 , HORVU2Hr1G109960.29 , HORVU2Hr1G109960.56 , HORVU2Hr1G109960.55 , HORVU2Hr1G109960.54 , HORVU2Hr1G109960.53 , HORVU2Hr1G109960.52 , HORVU2Hr1G109960.51 , HORVU2Hr1G109960.50
Wheat TraesCS2A02G492600 , TraesCS2A02G492600 , TraesCS2D02G492900 , TraesCS2D02G492900 , TraesCS2D02G492900 , TraesCS2B02G520800 , TraesCS2B02G520800 , TraesCS2B02G520800 , TraesCS2B02G520800 , TraesCS2B02G520800 , TraesCS2B02G520800
Populus -


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cDNA sequences
Sobic.004G098000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G027300 expressed protein -
2 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
3 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
4 Sobic.010G224700 - K17680: twinkle protein
5 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
7 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
8 Sobic.003G039300 expressed protein -
9 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
10 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
11 Sobic.002G112600 zinc finger family protein, putative, expressed -
12 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
13 Sobic.001G049800 DDT domain containing protein, putative, expressed -
14 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
15 Sobic.002G131000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@T-complex protein, putative, expressed -
16 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
17 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
18 Sobic.004G027400 - -
19 Sobic.006G128400 PPR repeat containing protein, expressed -
20 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41


Gene co-expression network
sample Sobic004G098000 Sobic004G098000 Sobic004G027300 Sobic004G027300 Sobic004G098000--Sobic004G027300 Sobic007G059700 Sobic007G059700 Sobic004G098000--Sobic007G059700 Sobic003G332900 Sobic003G332900 Sobic004G098000--Sobic003G332900 Sobic010G224700 Sobic010G224700 Sobic004G098000--Sobic010G224700 Sobic004G231600 Sobic004G231600 Sobic004G098000--Sobic004G231600 Sobic003G425100 Sobic003G425100 Sobic004G098000--Sobic003G425100 Sobic001G161400 Sobic001G161400 Sobic004G098000--Sobic001G161400 Sobic003G039300 Sobic003G039300 Sobic004G098000--Sobic003G039300 Sobic001G437801 Sobic001G437801 Sobic004G098000--Sobic001G437801 Sobic004G151000 Sobic004G151000 Sobic004G027300--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic004G027300--Sobic007G060600 Sobic002G378100 Sobic002G378100 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic001G453500 Sobic001G453500 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic002G112600 Sobic002G112600 Sobic004G027300--Sobic002G112600 Sobic006G273900 Sobic006G273900 Sobic007G059700--Sobic006G273900 Sobic007G059700--Sobic007G060600 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic008G165900 Sobic008G165900 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic004G231600--Sobic003G425100 Sobic004G231600--Sobic003G332900 Sobic004G231600--Sobic002G131000 Sobic004G231600--Sobic004G027300 Sobic004G231600--Sobic008G165900 Sobic004G231600--Sobic001G207200 Sobic004G231600--Sobic002G378100 Sobic001G422500 Sobic001G422500 Sobic004G231600--Sobic001G422500 Sobic004G231600--Sobic006G128400 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic006G198600 Sobic006G198600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic006G237100 Sobic006G237100 Sobic001G161400--Sobic006G237100 Sobic001G161400--Sobic003G039300 Sobic006G204100 Sobic006G204100 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic002G404900 Sobic002G404900 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic009G234200 Sobic009G234200 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300 Sobic006G110200 Sobic006G110200 Sobic003G039300--Sobic006G110200 Sobic003G039300--Sobic003G084500 Sobic007G069400 Sobic007G069400 Sobic003G039300--Sobic007G069400 Sobic003G039300--Sobic001G161400 Sobic001G537700 Sobic001G537700 Sobic003G039300--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic003G039300--Sobic009G137000 Sobic003G039300--Sobic010G211500 Sobic003G039300--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic003G039300--Sobic007G015300 Sobic010G099300 Sobic010G099300 Sobic001G437801--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic001G437801--Sobic001G040600 Sobic001G395300 Sobic001G395300 Sobic001G437801--Sobic001G395300 Sobic001G138000 Sobic001G138000 Sobic001G437801--Sobic001G138000 Sobic007G182600 Sobic007G182600 Sobic001G437801--Sobic007G182600 Sobic003G030400 Sobic003G030400 Sobic001G437801--Sobic003G030400 Sobic001G368300 Sobic001G368300 Sobic001G437801--Sobic001G368300 Sobic001G228300 Sobic001G228300 Sobic001G437801--Sobic001G228300 Sobic001G437801--Sobic001G049800
Octagon: transcription factors


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