Gene annotation
Transcriptome id Sobic.004G231600.1
Synonym TOC64-V, ATTOC64-V, MTOM64, Sb04g027530
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A194YR74
Pfam PF00515 PF13414 PF01425
Panther DB PTHR11895 PTHR11895:SF92
NCBI CDD KOG1211; Amidases
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016884carbon-nitrogen ligase activity, with glutamine as amido-N-donor


Orthologs (automatic annotation)
TAIR AT5G09420 : translocon at the outer membrane of chloroplasts 64-V
RAP-DB (Rice) LOC_Os02g51810.1 : expressed protein
MaizeGDB (Corn) Zm00025a022150
Brachypodium KQK01839 , PNT69605 , PNT69604 , PNT69606
Barley -
Wheat TraesCS6D02G298000 , TraesCS6A02G318800 , TraesCS6A02G318800 , TraesCS6B02G349000 , TraesCS6B02G349000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
2 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
3 Sobic.002G131000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@T-complex protein, putative, expressed -
4 Sobic.004G027300 expressed protein -
5 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
6 Sobic.001G207200 MEE12, putative, expressed -
7 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
8 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
9 Sobic.006G128400 PPR repeat containing protein, expressed -
10 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
11 Sobic.008G189900 NB-ARC domain containing protein, expressed -
12 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
13 Sobic.010G224700 - K17680: twinkle protein
14 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
15 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
16 Sobic.006G058800 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
17 Sobic.003G039300 expressed protein -
18 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
19 Sobic.005G145300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBO10 - F-box and other domain containing protein, expressed K12116: flavin-binding kelch repeat F-box protein 1
20 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein


Gene co-expression network
sample Sobic004G231600 Sobic004G231600 Sobic003G425100 Sobic003G425100 Sobic004G231600--Sobic003G425100 Sobic003G332900 Sobic003G332900 Sobic004G231600--Sobic003G332900 Sobic002G131000 Sobic002G131000 Sobic004G231600--Sobic002G131000 Sobic004G027300 Sobic004G027300 Sobic004G231600--Sobic004G027300 Sobic008G165900 Sobic008G165900 Sobic004G231600--Sobic008G165900 Sobic001G207200 Sobic001G207200 Sobic004G231600--Sobic001G207200 Sobic002G378100 Sobic002G378100 Sobic004G231600--Sobic002G378100 Sobic001G422500 Sobic001G422500 Sobic004G231600--Sobic001G422500 Sobic006G128400 Sobic006G128400 Sobic004G231600--Sobic006G128400 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic010G224700 Sobic010G224700 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic006G198600 Sobic006G198600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic003G332900--Sobic004G231600 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic003G332900--Sobic006G128400 Sobic002G131000--Sobic003G332900 Sobic002G131000--Sobic010G211500 Sobic002G131000--Sobic004G231600 Sobic002G131000--Sobic001G207200 Sobic007G227600 Sobic007G227600 Sobic002G131000--Sobic007G227600 Sobic003G068500 Sobic003G068500 Sobic002G131000--Sobic003G068500 Sobic003G356100 Sobic003G356100 Sobic002G131000--Sobic003G356100 Sobic010G074100 Sobic010G074100 Sobic002G131000--Sobic010G074100 Sobic005G028900 Sobic005G028900 Sobic002G131000--Sobic005G028900 Sobic004G151000 Sobic004G151000 Sobic004G027300--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic001G453500 Sobic001G453500 Sobic004G027300--Sobic001G453500 Sobic007G059700 Sobic007G059700 Sobic004G027300--Sobic007G059700 Sobic002G112600 Sobic002G112600 Sobic004G027300--Sobic002G112600 Sobic008G165900--Sobic001G224200 Sobic008G165900--Sobic003G332900 Sobic002G238000 Sobic002G238000 Sobic008G165900--Sobic002G238000 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic009G036300 Sobic009G036300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G207200--Sobic001G224200 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic001G422500--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic001G422500--Sobic008G163500 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic001G422500--Sobic006G198600 Sobic003G123200 Sobic003G123200 Sobic001G422500--Sobic003G123200 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic006G128400--Sobic002G092050 Sobic006G128400--Sobic001G224200 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100
Octagon: transcription factors


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