Gene annotation
Transcriptome id Sobic.008G189900.3,Sobic.008G189900.2
Synonym Sb08g023030, RPS3, RPM1
Functional annotation NB-ARC domain containing protein, expressed
UniProt A0A1B6PEL2 , A0A1B6PEL1
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF542
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os01g70080.1 : NB-ARC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004864
Brachypodium KQK18340
Barley HORVU7Hr1G082670.12 , HORVU7Hr1G082670.10 , HORVU7Hr1G082670.11 , HORVU7Hr1G082670.3 , HORVU7Hr1G082670.4 , HORVU7Hr1G082670.6 , HORVU7Hr1G082670.8 , HORVU7Hr1G082670.1 , HORVU7Hr1G082670.2 , HORVU7Hr1G082670.5 , HORVU7Hr1G082670.7 , HORVU7Hr1G082670.9
Wheat TraesCS7B02G247400 , TraesCS7D02G343500 , TraesCS7A02G335900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
3 Sobic.010G016600 CAMK_CAMK_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.010G143500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan water dikinase, chloroplast precursor, putative, expressed K08244: alpha-glucan, water dikinase
5 Sobic.004G296000 ceramide kinase-related, putative, expressed K04715: ceramide kinase
6 Sobic.001G207200 MEE12, putative, expressed -
7 Sobic.006G083300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K18995: ATP-dependent RNA helicase DHX29
8 Sobic.003G068400 receptor kinase, putative, expressed -
9 Sobic.003G358900 transporter, major facilitator family, putative, expressed K08193: MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other
10 Sobic.003G040900 photoperiodic flowering time gene(PubMedID : 22394582)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@GIGANTEA, putative, expressed K12124: GIGANTEA
11 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
12 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
13 Sobic.010G086900 OsFBX187 - F-box domain containing protein, expressed -
14 Sobic.002G008100 VHS and GAT domain containing protein, expressed -
15 Sobic.005G074000 OsFBX411 - F-box domain containing protein, expressed -
16 Sobic.005G140500 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
17 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
18 Sobic.003G039300 expressed protein -
19 Sobic.005G143900 regulator of chromosome condensation, putative, expressed -
20 Sobic.002G131000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@T-complex protein, putative, expressed -


Gene co-expression network
sample Sobic008G189900 Sobic008G189900 Sobic004G231600 Sobic004G231600 Sobic008G189900--Sobic004G231600 Sobic006G089400 Sobic006G089400 Sobic008G189900--Sobic006G089400 Sobic010G016600 Sobic010G016600 Sobic008G189900--Sobic010G016600 Sobic010G143500 Sobic010G143500 Sobic008G189900--Sobic010G143500 Sobic004G296000 Sobic004G296000 Sobic008G189900--Sobic004G296000 Sobic001G207200 Sobic001G207200 Sobic008G189900--Sobic001G207200 Sobic006G083300 Sobic006G083300 Sobic008G189900--Sobic006G083300 Sobic003G068400 Sobic003G068400 Sobic008G189900--Sobic003G068400 Sobic003G358900 Sobic003G358900 Sobic008G189900--Sobic003G358900 Sobic003G425100 Sobic003G425100 Sobic004G231600--Sobic003G425100 Sobic003G332900 Sobic003G332900 Sobic004G231600--Sobic003G332900 Sobic002G131000 Sobic002G131000 Sobic004G231600--Sobic002G131000 Sobic004G027300 Sobic004G027300 Sobic004G231600--Sobic004G027300 Sobic008G165900 Sobic008G165900 Sobic004G231600--Sobic008G165900 Sobic004G231600--Sobic001G207200 Sobic002G378100 Sobic002G378100 Sobic004G231600--Sobic002G378100 Sobic001G422500 Sobic001G422500 Sobic004G231600--Sobic001G422500 Sobic006G128400 Sobic006G128400 Sobic004G231600--Sobic006G128400 Sobic010G100800 Sobic010G100800 Sobic006G089400--Sobic010G100800 Sobic006G058800 Sobic006G058800 Sobic006G089400--Sobic006G058800 Sobic001G501300 Sobic001G501300 Sobic006G089400--Sobic001G501300 Sobic006G089400--Sobic010G143500 Sobic007G029500 Sobic007G029500 Sobic006G089400--Sobic007G029500 Sobic003G134000 Sobic003G134000 Sobic006G089400--Sobic003G134000 Sobic004G176000 Sobic004G176000 Sobic006G089400--Sobic004G176000 Sobic006G089400--Sobic001G207200 Sobic002G191100 Sobic002G191100 Sobic006G089400--Sobic002G191100 Sobic010G094700 Sobic010G094700 Sobic010G016600--Sobic010G094700 Sobic003G378100 Sobic003G378100 Sobic010G016600--Sobic003G378100 Sobic002G008100 Sobic002G008100 Sobic010G016600--Sobic002G008100 Sobic002G043100 Sobic002G043100 Sobic010G016600--Sobic002G043100 Sobic004G318000 Sobic004G318000 Sobic010G016600--Sobic004G318000 Sobic010G079500 Sobic010G079500 Sobic010G016600--Sobic010G079500 Sobic007G075800 Sobic007G075800 Sobic010G016600--Sobic007G075800 Sobic004G030800 Sobic004G030800 Sobic010G016600--Sobic004G030800 Sobic001G393900 Sobic001G393900 Sobic010G016600--Sobic001G393900 Sobic010G143500--Sobic006G089400 Sobic001G538800 Sobic001G538800 Sobic010G143500--Sobic001G538800 Sobic005G145300 Sobic005G145300 Sobic010G143500--Sobic005G145300 Sobic001G466800 Sobic001G466800 Sobic010G143500--Sobic001G466800 Sobic003G297800 Sobic003G297800 Sobic010G143500--Sobic003G297800 Sobic010G143500--Sobic008G189900 Sobic001G114400 Sobic001G114400 Sobic010G143500--Sobic001G114400 Sobic010G143500--Sobic002G191100 Sobic010G143500--Sobic004G296000 Sobic004G296000--Sobic005G145300 Sobic010G039200 Sobic010G039200 Sobic004G296000--Sobic010G039200 Sobic009G036300 Sobic009G036300 Sobic004G296000--Sobic009G036300 Sobic004G296000--Sobic001G207200 Sobic004G296000--Sobic004G231600 Sobic010G074200 Sobic010G074200 Sobic004G296000--Sobic010G074200 Sobic004G144000 Sobic004G144000 Sobic004G296000--Sobic004G144000 Sobic004G296000--Sobic001G114400 Sobic007G227600 Sobic007G227600 Sobic004G296000--Sobic007G227600 Sobic010G211500 Sobic010G211500 Sobic001G207200--Sobic010G211500 Sobic010G231100 Sobic010G231100 Sobic001G207200--Sobic010G231100 Sobic001G207200--Sobic001G501300 Sobic001G207200--Sobic009G036300 Sobic001G207200--Sobic008G165900 Sobic009G052700 Sobic009G052700 Sobic001G207200--Sobic009G052700 Sobic009G079950 Sobic009G079950 Sobic001G207200--Sobic009G079950 Sobic001G207200--Sobic003G332900 Sobic001G224200 Sobic001G224200 Sobic001G207200--Sobic001G224200 Sobic009G109200 Sobic009G109200 Sobic006G083300--Sobic009G109200 Sobic004G248600 Sobic004G248600 Sobic006G083300--Sobic004G248600 Sobic001G004400 Sobic001G004400 Sobic006G083300--Sobic001G004400 Sobic007G098500 Sobic007G098500 Sobic006G083300--Sobic007G098500 Sobic001G110600 Sobic001G110600 Sobic006G083300--Sobic001G110600 Sobic001G050600 Sobic001G050600 Sobic006G083300--Sobic001G050600 Sobic002G396500 Sobic002G396500 Sobic006G083300--Sobic002G396500 Sobic001G214600 Sobic001G214600 Sobic006G083300--Sobic001G214600 Sobic001G352900 Sobic001G352900 Sobic006G083300--Sobic001G352900 Sobic001G246200 Sobic001G246200 Sobic003G068400--Sobic001G246200 Sobic003G068400--Sobic008G189900 Sobic007G131200 Sobic007G131200 Sobic003G068400--Sobic007G131200 Sobic003G222600 Sobic003G222600 Sobic003G068400--Sobic003G222600 Sobic003G068500 Sobic003G068500 Sobic003G068400--Sobic003G068500 Sobic002G146400 Sobic002G146400 Sobic003G068400--Sobic002G146400 Sobic001G537700 Sobic001G537700 Sobic003G068400--Sobic001G537700 Sobic005G059200 Sobic005G059200 Sobic003G068400--Sobic005G059200 Sobic004G070200 Sobic004G070200 Sobic003G068400--Sobic004G070200 Sobic003G358900--Sobic001G114400 Sobic004G247800 Sobic004G247800 Sobic003G358900--Sobic004G247800 Sobic003G358900--Sobic002G191100 Sobic009G103600 Sobic009G103600 Sobic003G358900--Sobic009G103600 Sobic009G214200 Sobic009G214200 Sobic003G358900--Sobic009G214200 Sobic001G326300 Sobic001G326300 Sobic003G358900--Sobic001G326300 Sobic004G019500 Sobic004G019500 Sobic003G358900--Sobic004G019500 Sobic003G358900--Sobic008G189900 Sobic002G140000 Sobic002G140000 Sobic003G358900--Sobic002G140000
Octagon: transcription factors


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