Gene annotation
| Transcriptome id | Sobic.003G040900.2,Sobic.003G040900.3,Sobic.003G040900.1 |
|---|---|
| Synonym | GI, SbGI, GI;GIGANTEA, FB, GIGANTEA , Sb03g003650, GI;GIGANTEA |
| Functional annotation | photoperiodic flowering time gene (PubMedID : 22394582) - (PubMedID : 21930910) - (PubMedID : 24884377) GIGANTEA, putative, expressed |
| UniProt | I3RGW1 , A0A1B6Q1C9 , A0A1B6Q168 |
| Pfam | - |
| Panther DB | PTHR36319 PTHR36319:SF1 |
| NCBI CDD | - |
| KEGG Orthology | K12124; GIGANTEA |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G22770 : gigantea protein (GI) |
|---|---|
| RAP-DB (Rice) | LOC_Os01g08700.4,LOC_Os01g08700.6,LOC_Os01g08700.8 : GIGANTEA, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023154 , Zm00025a035807 |
| Brachypodium | KQK03049 |
| Barley | HORVU3Hr1G021150.2 , HORVU3Hr1G021150.1 , HORVU3Hr1G021140.11 , HORVU3Hr1G021140.10 , HORVU3Hr1G021140.13 , HORVU3Hr1G021140.12 , HORVU3Hr1G021140.9 , HORVU3Hr1G021140.8 , HORVU3Hr1G021140.5 , HORVU3Hr1G021140.4 , HORVU3Hr1G021140.7 , HORVU3Hr1G021140.6 , HORVU3Hr1G021140.1 , HORVU3Hr1G021140.3 , HORVU3Hr1G021140.2 |
| Wheat | TraesCS3B02G135400 , TraesCS3B02G135400 , TraesCS3B02G135400 , TraesCS3A02G116300 , TraesCS3A02G116300 , TraesCS3D02G118200 , TraesCS3D02G118200 |
| Populus | PNT37574 , PNT37575 , PNT37571 , PNT37572 , PNT37573 |
JBrowse
| Sobic.003G040900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G350000 | Citrate transporter protein, putative, expressed | - |
| 2 | Sobic.008G193300 | sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@"OsSUT2(Ortholog in rice:Eom et al., 2011)"(PubMedID : 31659914)@sucrose transporter, putativ, expressed | K15378: solute carrier family 45, member 1/2/4 |
| 3 | Sobic.005G140500 | peptidase, M24 family protein, putative, expressed | K01262: Xaa-Pro aminopeptidase |
| 4 | Sobic.001G279900 | CDPK - calmodulin-binding receptor-like cytoplasmic kinase 3(PubMedID : 31721651)@wall-associated receptor kinase-like 20 precursor, putative, expressed | - |
| 5 | Sobic.003G193200 | expressed protein | - |
| 6 | Sobic.008G189900 | NB-ARC domain containing protein, expressed | - |
| 7 | Sobic.002G137300 | oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed | - |
| 8 | Sobic.001G402500 | CPuORF14 - conserved peptide uORF-containing transcript, expressed | K03262: translation initiation factor 5 |
| 9 | Sobic.002G350600 | HEAT repeat family protein, putative, expressed | - |
| 10 | Sobic.008G081300 | protein kinase, putative, expressed | - |
| 11 | Sobic.003G372800 | expressed protein | - |
| 12 | Sobic.004G340800 | OsFBX70 - F-box domain containing protein, expressed | - |
| 13 | Sobic.004G262700 | - | - |
| 14 | Sobic.001G207200 | MEE12, putative, expressed | - |
| 15 | Sobic.003G035100 | no apical meristem protein, putative, expressed | - |
| 16 | Sobic.004G163200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 17 | Sobic.003G378400 | DUF803 domain containing, putative, expressed | - |
| 18 | Sobic.006G083800 | expressed protein | - |
| 19 | Sobic.002G339300 | myosin-Vb, putative, expressed | K10357: myosin V |
| 20 | Sobic.007G029500 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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