Gene annotation
Transcriptome id Sobic.002G350600.1
Synonym Sb02g037270, emb2734
Functional annotation HEAT repeat family protein, putative, expressed
UniProt C5XCD3
Pfam PF02985 PF13646
Panther DB PTHR10527 PTHR10527:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G19820 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os07g38760.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048481 , Zm00025a051680
Brachypodium KQK15571
Barley HORVU2Hr1G037470.7 , HORVU2Hr1G037470.6 , HORVU2Hr1G037470.5 , HORVU2Hr1G037470.9 , HORVU2Hr1G037470.8 , HORVU2Hr1G037470.3 , HORVU2Hr1G037470.2 , HORVU2Hr1G037470.1 , HORVU2Hr1G037470.4 , HORVU2Hr1G037470.13 , HORVU2Hr1G037470.12 , HORVU2Hr1G037470.11 , HORVU2Hr1G037470.10 , HORVU2Hr1G037470.14
Wheat TraesCS2B02G221600 , TraesCS2B02G221600 , TraesCS2B02G221600 , TraesCS2D02G202000 , TraesCS2D02G202000 , TraesCS2D02G202000 , TraesCS2A02G185700
Populus PNT06879 , PNT06878 , PNT06877 , PNT06876 , PNT06880


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
2 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
3 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
4 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
5 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
6 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
7 Sobic.001G312900 transporter family protein, putative, expressed -
8 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
10 Sobic.003G194100 mitochondrial carrier protein, putative, expressed K15084: SLC25A16, GDA, solute carrier family 25 (mitochondrial carrier protein), member 16
11 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B
12 Sobic.009G238850 - -
13 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
14 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
15 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
16 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
17 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
18 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
19 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
20 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase


Gene co-expression network
sample Sobic002G350600 Sobic002G350600 Sobic006G280000 Sobic006G280000 Sobic002G350600--Sobic006G280000 Sobic008G135200 Sobic008G135200 Sobic002G350600--Sobic008G135200 Sobic001G251100 Sobic001G251100 Sobic002G350600--Sobic001G251100 Sobic007G054800 Sobic007G054800 Sobic002G350600--Sobic007G054800 Sobic003G104000 Sobic003G104000 Sobic002G350600--Sobic003G104000 Sobic004G040900 Sobic004G040900 Sobic002G350600--Sobic004G040900 Sobic001G312900 Sobic001G312900 Sobic002G350600--Sobic001G312900 Sobic002G294800 Sobic002G294800 Sobic002G350600--Sobic002G294800 Sobic001G362200 Sobic001G362200 Sobic002G350600--Sobic001G362200 Sobic006G280000--Sobic007G054800 Sobic001G542500 Sobic001G542500 Sobic006G280000--Sobic001G542500 Sobic004G004300 Sobic004G004300 Sobic006G280000--Sobic004G004300 Sobic002G256700 Sobic002G256700 Sobic006G280000--Sobic002G256700 Sobic003G337300 Sobic003G337300 Sobic006G280000--Sobic003G337300 Sobic001G089600 Sobic001G089600 Sobic006G280000--Sobic001G089600 Sobic006G280000--Sobic003G104000 Sobic001G287500 Sobic001G287500 Sobic006G280000--Sobic001G287500 Sobic001G117200 Sobic001G117200 Sobic006G280000--Sobic001G117200 Sobic002G020700 Sobic002G020700 Sobic008G135200--Sobic002G020700 Sobic009G045900 Sobic009G045900 Sobic008G135200--Sobic009G045900 Sobic006G073200 Sobic006G073200 Sobic008G135200--Sobic006G073200 Sobic008G157200 Sobic008G157200 Sobic008G135200--Sobic008G157200 Sobic008G135200--Sobic002G350600 Sobic008G135200--Sobic001G251100 Sobic003G029600 Sobic003G029600 Sobic008G135200--Sobic003G029600 Sobic008G033500 Sobic008G033500 Sobic008G135200--Sobic008G033500 Sobic008G135200--Sobic007G054800 Sobic001G251100--Sobic003G104000 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic007G054800--Sobic006G280000 Sobic007G054800--Sobic002G256700 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic007G054800--Sobic004G131300 Sobic003G104000--Sobic003G337300 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic003G104000--Sobic001G251100 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic002G359400 Sobic002G359400 Sobic004G040900--Sobic002G359400 Sobic004G040900--Sobic002G294800 Sobic010G013200 Sobic010G013200 Sobic004G040900--Sobic010G013200 Sobic001G402500 Sobic001G402500 Sobic004G040900--Sobic001G402500 Sobic008G070800 Sobic008G070800 Sobic004G040900--Sobic008G070800 Sobic001G120500 Sobic001G120500 Sobic004G040900--Sobic001G120500 Sobic008G183700 Sobic008G183700 Sobic004G040900--Sobic008G183700 Sobic004G296400 Sobic004G296400 Sobic004G040900--Sobic004G296400 Sobic003G355900 Sobic003G355900 Sobic004G040900--Sobic003G355900 Sobic001G312900--Sobic001G362200 Sobic003G109700 Sobic003G109700 Sobic001G312900--Sobic003G109700 Sobic002G134600 Sobic002G134600 Sobic001G312900--Sobic002G134600 Sobic001G312900--Sobic004G004300 Sobic001G312900--Sobic002G350600 Sobic001G312900--Sobic006G280000 Sobic009G042700 Sobic009G042700 Sobic001G312900--Sobic009G042700 Sobic006G052500 Sobic006G052500 Sobic001G312900--Sobic006G052500 Sobic003G331400 Sobic003G331400 Sobic001G312900--Sobic003G331400 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic002G294800--Sobic010G013200 Sobic003G332500 Sobic003G332500 Sobic001G362200--Sobic003G332500 Sobic001G362200--Sobic003G109700 Sobic006G032900 Sobic006G032900 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic004G192200 Sobic004G192200 Sobic001G362200--Sobic004G192200 Sobic004G072100 Sobic004G072100 Sobic001G362200--Sobic004G072100 Sobic001G362200--Sobic002G134600 Sobic007G183900 Sobic007G183900 Sobic001G362200--Sobic007G183900
Octagon: transcription factors


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