Gene annotation
Transcriptome id Sobic.004G350000.1
Synonym Sb04g037670
Functional annotation Citrate transporter protein, putative, expressed
UniProt C5XW09
Pfam PF03600
Panther DB PTHR10283 PTHR10283:SF94
NCBI CDD KOG2639; Sodium sulfate symporter and related arsenite permeases
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G02260 : Divalent ion symporter
RAP-DB (Rice) LOC_Os02g57620.1 : Citrate transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a017700 , Zm00025a000142 , Zm00025a003264 , Zm00025a032761 , Zm00025a006747
Brachypodium KQK24090 , KQJ97708 , KQK01440 , PNT78202 , PNT78201 , PNT78200 , KQK23658 , PNT78199 , PNT78198
Barley HORVU1Hr1G037760.13 , HORVU1Hr1G037760.10 , HORVU4Hr1G079710.8 , HORVU4Hr1G079710.9 , HORVU4Hr1G079710.2 , HORVU4Hr1G079710.3 , HORVU4Hr1G079710.1 , HORVU4Hr1G079710.6 , HORVU4Hr1G079710.7 , HORVU4Hr1G079710.4 , HORVU4Hr1G079710.5 , HORVU1Hr1G037760.8 , HORVU1Hr1G037760.9 , HORVU6Hr1G092430.8 , HORVU6Hr1G092430.9 , HORVU6Hr1G092430.6 , HORVU1Hr1G037760.1 , HORVU6Hr1G092430.4 , HORVU6Hr1G092430.5 , HORVU6Hr1G092430.2 , HORVU6Hr1G092430.3 , HORVU1Hr1G037760.6 , HORVU6Hr1G092430.1 , HORVU1Hr1G037760.12 , HORVU1Hr1G037760.11 , HORVU1Hr1G037760.16 , HORVU1Hr1G037760.14 , HORVU1Hr1G037760.15 , HORVU4Hr1G086800.1 , HORVU4Hr1G086800.2 , HORVU4Hr1G086800.3 , HORVU7Hr1G109360.1 , HORVU6Hr1G092430.14 , HORVU6Hr1G092430.15 , HORVU6Hr1G092430.16 , HORVU6Hr1G092430.11 , HORVU6Hr1G092430.12 , HORVU6Hr1G092430.7 , HORVU6Hr1G092430.10 , HORVU1Hr1G037760.2 , HORVU1Hr1G037760.3 , HORVU1Hr1G037760.4 , HORVU1Hr1G053160.2 , HORVU1Hr1G053160.3 , HORVU1Hr1G053160.4 , HORVU1Hr1G053160.5 , HORVU1Hr1G037760.5 , HORVU1Hr1G037760.7 , HORVU4Hr1G079710.10 , HORVU6Hr1G092430.13 , HORVU1Hr1G053160.1 , HORVU6Hr1G068840.1
Wheat TraesCS1A02G142400 , TraesCS1D02G141400 , TraesCS4A02G412500 , TraesCS4D02G354900 , TraesCS1B02G221100 , TraesCS1A02G207300 , TraesCS6B02G444100 , TraesCS6B02G444100 , TraesCS5A02G529900 , TraesCS4B02G312600 , TraesCS1B02G159400 , TraesCS1D02G210500 , TraesCS6D02G385600 , TraesCS4D02G310100 , TraesCS6A02G402000 , TraesCS4B02G361900
Populus -


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cDNA sequences
Sobic.004G350000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G040900 photoperiodic flowering time gene(PubMedID : 22394582)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@GIGANTEA, putative, expressed K12124: GIGANTEA
2 Sobic.008G193300 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@"OsSUT2(Ortholog in rice:Eom et al., 2011)"(PubMedID : 31659914)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
3 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
4 Sobic.001G466900 expressed protein -
5 Sobic.005G140500 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
6 Sobic.002G404200 F-box domain containing protein, expressed -
7 Sobic.001G279900 CDPK - calmodulin-binding receptor-like cytoplasmic kinase 3(PubMedID : 31721651)@wall-associated receptor kinase-like 20 precursor, putative, expressed -
8 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
9 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
10 Sobic.001G121100 integral membrane protein, putative, expressed -
11 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
12 Sobic.001G067300 histidinol dehydrogenase, chloroplast precursor, putative, expressed K00013: histidinol dehydrogenase
13 Sobic.004G281300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
14 Sobic.005G012700 expressed protein -
15 Sobic.002G367100 protein of unknown function DUF1675 domain containing protein, expressed -
16 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
17 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
18 Sobic.009G094700 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
19 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
20 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G350000 Sobic004G350000 Sobic003G040900 Sobic003G040900 Sobic004G350000--Sobic003G040900 Sobic008G193300 Sobic008G193300 Sobic004G350000--Sobic008G193300 Sobic010G080300 Sobic010G080300 Sobic004G350000--Sobic010G080300 Sobic001G466900 Sobic001G466900 Sobic004G350000--Sobic001G466900 Sobic005G140500 Sobic005G140500 Sobic004G350000--Sobic005G140500 Sobic002G404200 Sobic002G404200 Sobic004G350000--Sobic002G404200 Sobic001G279900 Sobic001G279900 Sobic004G350000--Sobic001G279900 Sobic007G029100 Sobic007G029100 Sobic004G350000--Sobic007G029100 Sobic009G036300 Sobic009G036300 Sobic004G350000--Sobic009G036300 Sobic003G040900--Sobic004G350000 Sobic003G040900--Sobic008G193300 Sobic003G040900--Sobic005G140500 Sobic003G040900--Sobic001G279900 Sobic003G193200 Sobic003G193200 Sobic003G040900--Sobic003G193200 Sobic008G189900 Sobic008G189900 Sobic003G040900--Sobic008G189900 Sobic002G137300 Sobic002G137300 Sobic003G040900--Sobic002G137300 Sobic001G402500 Sobic001G402500 Sobic003G040900--Sobic001G402500 Sobic002G350600 Sobic002G350600 Sobic003G040900--Sobic002G350600 Sobic008G063200 Sobic008G063200 Sobic008G193300--Sobic008G063200 Sobic008G193300--Sobic010G080300 Sobic008G193300--Sobic002G404200 Sobic004G265900 Sobic004G265900 Sobic008G193300--Sobic004G265900 Sobic006G214700 Sobic006G214700 Sobic008G193300--Sobic006G214700 Sobic001G450600 Sobic001G450600 Sobic008G193300--Sobic001G450600 Sobic009G079950 Sobic009G079950 Sobic008G193300--Sobic009G079950 Sobic002G142066 Sobic002G142066 Sobic008G193300--Sobic002G142066 Sobic004G144000 Sobic004G144000 Sobic008G193300--Sobic004G144000 Sobic002G281800 Sobic002G281800 Sobic010G080300--Sobic002G281800 Sobic010G080300--Sobic008G193300 Sobic003G125400 Sobic003G125400 Sobic010G080300--Sobic003G125400 Sobic007G046500 Sobic007G046500 Sobic010G080300--Sobic007G046500 Sobic010G080300--Sobic008G063200 Sobic008G144800 Sobic008G144800 Sobic010G080300--Sobic008G144800 Sobic005G072200 Sobic005G072200 Sobic010G080300--Sobic005G072200 Sobic010G080300--Sobic007G029100 Sobic003G310100 Sobic003G310100 Sobic010G080300--Sobic003G310100 Sobic004G055500 Sobic004G055500 Sobic001G466900--Sobic004G055500 Sobic006G091300 Sobic006G091300 Sobic001G466900--Sobic006G091300 Sobic004G301200 Sobic004G301200 Sobic001G466900--Sobic004G301200 Sobic001G466900--Sobic001G402500 Sobic004G327800 Sobic004G327800 Sobic001G466900--Sobic004G327800 Sobic007G208300 Sobic007G208300 Sobic001G466900--Sobic007G208300 Sobic004G144400 Sobic004G144400 Sobic001G466900--Sobic004G144400 Sobic001G291900 Sobic001G291900 Sobic001G466900--Sobic001G291900 Sobic001G466900--Sobic010G080300 Sobic004G262700 Sobic004G262700 Sobic005G140500--Sobic004G262700 Sobic010G100800 Sobic010G100800 Sobic005G140500--Sobic010G100800 Sobic002G428800 Sobic002G428800 Sobic005G140500--Sobic002G428800 Sobic010G013300 Sobic010G013300 Sobic005G140500--Sobic010G013300 Sobic006G238700 Sobic006G238700 Sobic005G140500--Sobic006G238700 Sobic003G194100 Sobic003G194100 Sobic005G140500--Sobic003G194100 Sobic006G280000 Sobic006G280000 Sobic005G140500--Sobic006G280000 Sobic001G396000 Sobic001G396000 Sobic005G140500--Sobic001G396000 Sobic007G029500 Sobic007G029500 Sobic005G140500--Sobic007G029500 Sobic001G300100 Sobic001G300100 Sobic002G404200--Sobic001G300100 Sobic002G404200--Sobic002G142066 Sobic002G404200--Sobic010G100800 Sobic002G404200--Sobic007G029100 Sobic002G404200--Sobic008G193300 Sobic010G086900 Sobic010G086900 Sobic002G404200--Sobic010G086900 Sobic001G341800 Sobic001G341800 Sobic002G404200--Sobic001G341800 Sobic002G404200--Sobic001G279900 Sobic009G004800 Sobic009G004800 Sobic002G404200--Sobic009G004800 Sobic002G168500 Sobic002G168500 Sobic001G279900--Sobic002G168500 Sobic001G279900--Sobic002G404200 Sobic001G279900--Sobic001G402500 Sobic009G162600 Sobic009G162600 Sobic001G279900--Sobic009G162600 Sobic008G172300 Sobic008G172300 Sobic001G279900--Sobic008G172300 Sobic003G378400 Sobic003G378400 Sobic001G279900--Sobic003G378400 Sobic001G279900--Sobic010G100800 Sobic004G026500 Sobic004G026500 Sobic001G279900--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G279900--Sobic001G124100 Sobic007G029100--Sobic002G404200 Sobic009G029700 Sobic009G029700 Sobic007G029100--Sobic009G029700 Sobic001G380500 Sobic001G380500 Sobic007G029100--Sobic001G380500 Sobic010G113000 Sobic010G113000 Sobic007G029100--Sobic010G113000 Sobic007G029100--Sobic010G080300 Sobic007G029100--Sobic001G341800 Sobic007G029100--Sobic002G281800 Sobic007G073700 Sobic007G073700 Sobic007G029100--Sobic007G073700 Sobic005G064800 Sobic005G064800 Sobic007G029100--Sobic005G064800 Sobic007G227600 Sobic007G227600 Sobic009G036300--Sobic007G227600 Sobic001G388400 Sobic001G388400 Sobic009G036300--Sobic001G388400 Sobic010G074200 Sobic010G074200 Sobic009G036300--Sobic010G074200 Sobic010G028000 Sobic010G028000 Sobic009G036300--Sobic010G028000 Sobic010G074100 Sobic010G074100 Sobic009G036300--Sobic010G074100 Sobic010G211500 Sobic010G211500 Sobic009G036300--Sobic010G211500 Sobic009G234200 Sobic009G234200 Sobic009G036300--Sobic009G234200 Sobic006G204100 Sobic006G204100 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700
Octagon: transcription factors


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