Gene annotation
Transcriptome id Sobic.004G281300.1,Sobic.004G281300.2
Synonym Sb04g031780
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
protein kinase domain containing protein, expressed
UniProt A0A194YT47 , A0A194YS53
Pfam PF01476 PF00069
Panther DB PTHR27001 PTHR27001:SF241
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G23770 : protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
RAP-DB (Rice) LOC_Os02g45750.1 : protein kinase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032328 , Zm00025a021525
Brachypodium KQK00789
Barley HORVU6Hr1G066120.3 , HORVU6Hr1G066120.2 , HORVU6Hr1G066120.1 , HORVU0Hr1G023200.2 , HORVU0Hr1G023200.1
Wheat TraesCS6D02G240100 , TraesCS6B02G266500 , TraesCS6A02G258900
Populus -


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cDNA sequences
Sobic.004G281300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G089700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
2 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
3 Sobic.009G028500 zinc finger family protein, putative, expressed -
4 Sobic.002G301800 GRAS family transcription factor domain containing protein, expressed -
5 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
6 Sobic.003G422700 amino acid permease family protein, putative, expressed -
7 Sobic.001G034300 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
8 Sobic.004G337500 GATA zinc finger domain containing protein, expressed -
9 Sobic.001G351100 LOL3, putative, expressed -
10 Sobic.007G124100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
11 Sobic.004G092000 expressed protein -
12 Sobic.003G002600 -(PubMedID : 23001790)@GLK2(PubMedID : 24676859)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
13 Sobic.004G350000 Citrate transporter protein, putative, expressed -
14 Sobic.001G161200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.004G006500 expressed protein -
16 Sobic.009G032400 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
17 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
18 Sobic.002G073900 expressed protein -
19 Sobic.004G174900 - -
20 Sobic.001G236400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic004G281300 Sobic004G281300 Sobic010G089700 Sobic010G089700 Sobic004G281300--Sobic010G089700 Sobic006G042200 Sobic006G042200 Sobic004G281300--Sobic006G042200 Sobic009G028500 Sobic009G028500 Sobic004G281300--Sobic009G028500 Sobic002G301800 Sobic002G301800 Sobic004G281300--Sobic002G301800 Sobic003G403500 Sobic003G403500 Sobic004G281300--Sobic003G403500 Sobic003G422700 Sobic003G422700 Sobic004G281300--Sobic003G422700 Sobic001G034300 Sobic001G034300 Sobic004G281300--Sobic001G034300 Sobic004G337500 Sobic004G337500 Sobic004G281300--Sobic004G337500 Sobic001G351100 Sobic001G351100 Sobic004G281300--Sobic001G351100 Sobic010G089700--Sobic009G028500 Sobic010G089700--Sobic004G281300 Sobic004G006500 Sobic004G006500 Sobic010G089700--Sobic004G006500 Sobic004G092000 Sobic004G092000 Sobic010G089700--Sobic004G092000 Sobic009G032400 Sobic009G032400 Sobic010G089700--Sobic009G032400 Sobic002G137800 Sobic002G137800 Sobic010G089700--Sobic002G137800 Sobic002G418900 Sobic002G418900 Sobic010G089700--Sobic002G418900 Sobic001G095750 Sobic001G095750 Sobic010G089700--Sobic001G095750 Sobic007G124100 Sobic007G124100 Sobic010G089700--Sobic007G124100 Sobic004G135300 Sobic004G135300 Sobic006G042200--Sobic004G135300 Sobic007G054100 Sobic007G054100 Sobic006G042200--Sobic007G054100 Sobic001G222250 Sobic001G222250 Sobic006G042200--Sobic001G222250 Sobic004G174900 Sobic004G174900 Sobic006G042200--Sobic004G174900 Sobic008G125600 Sobic008G125600 Sobic006G042200--Sobic008G125600 Sobic004G010101 Sobic004G010101 Sobic006G042200--Sobic004G010101 Sobic009G008100 Sobic009G008100 Sobic006G042200--Sobic009G008100 Sobic002G073900 Sobic002G073900 Sobic006G042200--Sobic002G073900 Sobic002G040800 Sobic002G040800 Sobic006G042200--Sobic002G040800 Sobic004G065900 Sobic004G065900 Sobic009G028500--Sobic004G065900 Sobic009G028500--Sobic004G006500 Sobic009G028500--Sobic010G089700 Sobic009G028500--Sobic002G418900 Sobic002G207300 Sobic002G207300 Sobic009G028500--Sobic002G207300 Sobic002G367900 Sobic002G367900 Sobic009G028500--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic009G028500--Sobic001G118900 Sobic009G010400 Sobic009G010400 Sobic009G028500--Sobic009G010400 Sobic002G185200 Sobic002G185200 Sobic009G028500--Sobic002G185200 Sobic005G229400 Sobic005G229400 Sobic002G301800--Sobic005G229400 Sobic010G009400 Sobic010G009400 Sobic002G301800--Sobic010G009400 Sobic008G090600 Sobic008G090600 Sobic002G301800--Sobic008G090600 Sobic003G413500 Sobic003G413500 Sobic002G301800--Sobic003G413500 Sobic009G138200 Sobic009G138200 Sobic002G301800--Sobic009G138200 Sobic002G301800--Sobic004G281300 Sobic004G237600 Sobic004G237600 Sobic002G301800--Sobic004G237600 Sobic003G436300 Sobic003G436300 Sobic002G301800--Sobic003G436300 Sobic002G251700 Sobic002G251700 Sobic002G301800--Sobic002G251700 Sobic002G001000 Sobic002G001000 Sobic003G403500--Sobic002G001000 Sobic001G500800 Sobic001G500800 Sobic003G403500--Sobic001G500800 Sobic003G375900 Sobic003G375900 Sobic003G403500--Sobic003G375900 Sobic002G367100 Sobic002G367100 Sobic003G403500--Sobic002G367100 Sobic003G002600 Sobic003G002600 Sobic003G403500--Sobic003G002600 Sobic004G201700 Sobic004G201700 Sobic003G403500--Sobic004G201700 Sobic004G131900 Sobic004G131900 Sobic003G403500--Sobic004G131900 Sobic002G200700 Sobic002G200700 Sobic003G403500--Sobic002G200700 Sobic004G340800 Sobic004G340800 Sobic003G403500--Sobic004G340800 Sobic003G422700--Sobic001G351100 Sobic003G422700--Sobic009G028500 Sobic003G422700--Sobic003G403500 Sobic003G422700--Sobic006G042200 Sobic003G422700--Sobic004G281300 Sobic003G424400 Sobic003G424400 Sobic003G422700--Sobic003G424400 Sobic003G422700--Sobic001G034300 Sobic009G195300 Sobic009G195300 Sobic003G422700--Sobic009G195300 Sobic003G422700--Sobic008G125600 Sobic001G251200 Sobic001G251200 Sobic001G034300--Sobic001G251200 Sobic004G004200 Sobic004G004200 Sobic001G034300--Sobic004G004200 Sobic002G119700 Sobic002G119700 Sobic001G034300--Sobic002G119700 Sobic001G034300--Sobic009G138200 Sobic003G126300 Sobic003G126300 Sobic001G034300--Sobic003G126300 Sobic001G312900 Sobic001G312900 Sobic001G034300--Sobic001G312900 Sobic004G004300 Sobic004G004300 Sobic001G034300--Sobic004G004300 Sobic003G036800 Sobic003G036800 Sobic001G034300--Sobic003G036800 Sobic002G134600 Sobic002G134600 Sobic001G034300--Sobic002G134600 Sobic003G423300 Sobic003G423300 Sobic004G337500--Sobic003G423300 Sobic001G109100 Sobic001G109100 Sobic004G337500--Sobic001G109100 Sobic004G337500--Sobic001G095750 Sobic004G337500--Sobic004G281300 Sobic001G430700 Sobic001G430700 Sobic004G337500--Sobic001G430700 Sobic001G450800 Sobic001G450800 Sobic004G337500--Sobic001G450800 Sobic002G009900 Sobic002G009900 Sobic004G337500--Sobic002G009900 Sobic001G145100 Sobic001G145100 Sobic004G337500--Sobic001G145100 Sobic003G361300 Sobic003G361300 Sobic004G337500--Sobic003G361300 Sobic005G072200 Sobic005G072200 Sobic001G351100--Sobic005G072200 Sobic001G351100--Sobic003G422700 Sobic001G351100--Sobic006G042200 Sobic004G251300 Sobic004G251300 Sobic001G351100--Sobic004G251300 Sobic001G351100--Sobic004G340800 Sobic001G351100--Sobic002G137800 Sobic001G351100--Sobic002G073900 Sobic001G351100--Sobic003G403500 Sobic001G351100--Sobic007G054100
Octagon: transcription factors


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