Gene annotation
Transcriptome id Sobic.009G028500.4,Sobic.009G028500.5,Sobic.009G028500.6
Synonym Sb09g002390
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1Z5R1M9
Pfam PF00642
Panther DB PTHR14493 PTHR14493:SF48
NCBI CDD KOG1595; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58620 : zinc finger (CCCH-type) family protein
RAP-DB (Rice) LOC_Os05g03760.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a040709 , Zm00025a054412 , Zm00025a038174 , Zm00025a023044 , Zm00025a035799
Brachypodium KQK07846 , PNT74906 , KQK07889 , KQJ86556 , KQJ86557 , KQK15663
Barley HORVU2Hr1G058850.4 , HORVU2Hr1G058850.2 , HORVU2Hr1G058850.1 , HORVU1Hr1G014730.1 , HORVU1Hr1G014730.2 , HORVU1Hr1G014730.3 , HORVU1Hr1G014730.4 , HORVU1Hr1G014730.5 , HORVU1Hr1G014730.6 , HORVU3Hr1G019510.1 , HORVU5Hr1G027590.2 , HORVU5Hr1G027590.3 , HORVU5Hr1G027590.1 , HORVU5Hr1G027590.6 , HORVU5Hr1G027590.7 , HORVU5Hr1G027590.4 , HORVU5Hr1G027590.5
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G028500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
2 Sobic.004G006500 expressed protein -
3 Sobic.010G089700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
4 Sobic.002G418900 expressed protein -
5 Sobic.002G207300 tetraspanin family protein, putative, expressed -
6 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
7 Sobic.001G118900 DUF292 domain containing protein, expressed -
8 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
9 Sobic.002G185200 VQ domain containing protein, putative, expressed -
10 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
11 Sobic.009G212800 WRKY7, expressed -
12 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
13 Sobic.002G401600 glycosyltransferase, putative, expressed -
14 Sobic.001G161200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.004G281300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
16 Sobic.003G422700 amino acid permease family protein, putative, expressed -
17 Sobic.002G137800 gibberellin 20 oxidase 2, putative, expressed -
18 Sobic.006G114200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@heavy metal associated domain containing protein, expressed -
19 Sobic.007G143400 tetraspanin family protein, putative, expressed -
20 Sobic.003G291600 receptor-like protein kinase 5 precursor, putative, expressed -


Gene co-expression network
sample Sobic009G028500 Sobic009G028500 Sobic004G065900 Sobic004G065900 Sobic009G028500--Sobic004G065900 Sobic004G006500 Sobic004G006500 Sobic009G028500--Sobic004G006500 Sobic010G089700 Sobic010G089700 Sobic009G028500--Sobic010G089700 Sobic002G418900 Sobic002G418900 Sobic009G028500--Sobic002G418900 Sobic002G207300 Sobic002G207300 Sobic009G028500--Sobic002G207300 Sobic002G367900 Sobic002G367900 Sobic009G028500--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic009G028500--Sobic001G118900 Sobic009G010400 Sobic009G010400 Sobic009G028500--Sobic009G010400 Sobic002G185200 Sobic002G185200 Sobic009G028500--Sobic002G185200 Sobic004G065900--Sobic002G207300 Sobic001G095700 Sobic001G095700 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic004G065900--Sobic001G118900 Sobic002G294600 Sobic002G294600 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic007G145700 Sobic007G145700 Sobic004G065900--Sobic007G145700 Sobic004G065900--Sobic009G010400 Sobic004G006500--Sobic002G185200 Sobic004G006500--Sobic002G418900 Sobic004G006500--Sobic001G118900 Sobic004G006500--Sobic009G010400 Sobic004G006500--Sobic009G028500 Sobic004G006500--Sobic004G065900 Sobic002G195800 Sobic002G195800 Sobic004G006500--Sobic002G195800 Sobic006G114200 Sobic006G114200 Sobic004G006500--Sobic006G114200 Sobic004G086800 Sobic004G086800 Sobic004G006500--Sobic004G086800 Sobic010G089700--Sobic009G028500 Sobic004G281300 Sobic004G281300 Sobic010G089700--Sobic004G281300 Sobic010G089700--Sobic004G006500 Sobic004G092000 Sobic004G092000 Sobic010G089700--Sobic004G092000 Sobic009G032400 Sobic009G032400 Sobic010G089700--Sobic009G032400 Sobic002G137800 Sobic002G137800 Sobic010G089700--Sobic002G137800 Sobic010G089700--Sobic002G418900 Sobic001G095750 Sobic001G095750 Sobic010G089700--Sobic001G095750 Sobic007G124100 Sobic007G124100 Sobic010G089700--Sobic007G124100 Sobic002G418900--Sobic004G006500 Sobic002G418900--Sobic002G185200 Sobic002G418900--Sobic001G118900 Sobic002G418900--Sobic004G065900 Sobic002G418900--Sobic009G028500 Sobic002G418900--Sobic002G367900 Sobic002G418900--Sobic002G207300 Sobic007G143400 Sobic007G143400 Sobic002G418900--Sobic007G143400 Sobic001G131200 Sobic001G131200 Sobic002G418900--Sobic001G131200 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic002G207300--Sobic006G146500 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic002G207300--Sobic001G095700 Sobic002G367900--Sobic002G207300 Sobic002G367900--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic002G367900--Sobic003G268900 Sobic002G367900--Sobic001G095700 Sobic001G462800 Sobic001G462800 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G197600 Sobic002G197600 Sobic002G367900--Sobic002G197600 Sobic006G210300 Sobic006G210300 Sobic002G367900--Sobic006G210300 Sobic004G244100 Sobic004G244100 Sobic002G367900--Sobic004G244100 Sobic001G118900--Sobic004G065900 Sobic001G161200 Sobic001G161200 Sobic001G118900--Sobic001G161200 Sobic001G118900--Sobic002G367900 Sobic001G118900--Sobic002G207300 Sobic001G118900--Sobic004G006500 Sobic001G118900--Sobic002G294600 Sobic001G118900--Sobic002G418900 Sobic001G118900--Sobic001G095750 Sobic001G118900--Sobic001G462800 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic001G064900 Sobic001G064900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic009G010400--Sobic001G095700 Sobic010G102000 Sobic010G102000 Sobic009G010400--Sobic010G102000 Sobic009G010400--Sobic004G006500 Sobic002G185200--Sobic004G006500 Sobic002G185200--Sobic002G418900 Sobic002G185200--Sobic002G294600 Sobic002G185200--Sobic004G065900 Sobic002G185200--Sobic001G118900 Sobic002G185200--Sobic006G146500 Sobic002G185200--Sobic007G143400 Sobic002G185200--Sobic006G114200 Sobic002G185200--Sobic004G086800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.