Gene annotation
Transcriptome id Sobic.007G143400.1
Synonym Sb07g021870, TET8
Functional annotation tetraspanin family protein, putative, expressed
UniProt C5YLN7
Pfam PF00335
Panther DB PTHR32191 PTHR32191:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G23810 : tetraspanin8
RAP-DB (Rice) LOC_Os08g34460.1 : tetraspanin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005827 , Zm00025a047075
Brachypodium -
Barley HORVU5Hr1G064020.3 , HORVU5Hr1G064020.2 , HORVU5Hr1G064020.1
Wheat TraesCS7D02G488300 , TraesCS5B02G219700 , TraesCS7A02G500900 , TraesCS7B02G408200 , TraesCS5D02G228600 , TraesCS5A02G220600
Populus -


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cDNA sequences
Sobic.007G143400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G341900 - -
2 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
4 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
5 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
6 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
7 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
8 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
10 Sobic.007G145700 expressed protein -
11 Sobic.002G401600 glycosyltransferase, putative, expressed -
12 Sobic.010G023300 expressed protein -
13 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
14 Sobic.002G185200 VQ domain containing protein, putative, expressed -
15 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
16 Sobic.001G118900 DUF292 domain containing protein, expressed -
17 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
18 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
19 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
20 Sobic.009G010400 zinc finger, RING-type, putative, expressed -


Gene co-expression network
sample Sobic007G143400 Sobic007G143400 Sobic002G341900 Sobic002G341900 Sobic007G143400--Sobic002G341900 Sobic001G095700 Sobic001G095700 Sobic007G143400--Sobic001G095700 Sobic002G294600 Sobic002G294600 Sobic007G143400--Sobic002G294600 Sobic002G217100 Sobic002G217100 Sobic007G143400--Sobic002G217100 Sobic001G462800 Sobic001G462800 Sobic007G143400--Sobic001G462800 Sobic003G268900 Sobic003G268900 Sobic007G143400--Sobic003G268900 Sobic002G367900 Sobic002G367900 Sobic007G143400--Sobic002G367900 Sobic006G210300 Sobic006G210300 Sobic007G143400--Sobic006G210300 Sobic004G065900 Sobic004G065900 Sobic007G143400--Sobic004G065900 Sobic002G341900--Sobic007G143400 Sobic007G145700 Sobic007G145700 Sobic002G341900--Sobic007G145700 Sobic010G102000 Sobic010G102000 Sobic002G341900--Sobic010G102000 Sobic001G064900 Sobic001G064900 Sobic002G341900--Sobic001G064900 Sobic002G341900--Sobic002G294600 Sobic001G489500 Sobic001G489500 Sobic002G341900--Sobic001G489500 Sobic002G341900--Sobic001G095700 Sobic006G273800 Sobic006G273800 Sobic002G341900--Sobic006G273800 Sobic009G217500 Sobic009G217500 Sobic002G341900--Sobic009G217500 Sobic001G095700--Sobic004G065900 Sobic001G095700--Sobic003G268900 Sobic001G095700--Sobic002G294600 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G095700--Sobic001G064900 Sobic003G341100 Sobic003G341100 Sobic001G095700--Sobic003G341100 Sobic002G294600--Sobic007G145700 Sobic002G294600--Sobic001G462800 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G294600--Sobic002G217100 Sobic002G294600--Sobic003G341100 Sobic006G146500 Sobic006G146500 Sobic002G294600--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G294600--Sobic001G118900 Sobic002G217100--Sobic006G210300 Sobic001G081600 Sobic001G081600 Sobic002G217100--Sobic001G081600 Sobic002G217100--Sobic001G462800 Sobic004G281200 Sobic004G281200 Sobic002G217100--Sobic004G281200 Sobic002G197600 Sobic002G197600 Sobic002G217100--Sobic002G197600 Sobic010G016500 Sobic010G016500 Sobic002G217100--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic002G217100--Sobic004G244300 Sobic009G167000 Sobic009G167000 Sobic002G217100--Sobic009G167000 Sobic004G244100 Sobic004G244100 Sobic002G217100--Sobic004G244100 Sobic001G462800--Sobic001G081600 Sobic001G462800--Sobic002G217100 Sobic001G462800--Sobic002G294600 Sobic001G462800--Sobic002G197600 Sobic002G344700 Sobic002G344700 Sobic001G462800--Sobic002G344700 Sobic001G462800--Sobic002G367900 Sobic001G462800--Sobic006G210300 Sobic001G462800--Sobic007G145700 Sobic001G462800--Sobic004G281200 Sobic003G268900--Sobic004G244100 Sobic003G268900--Sobic001G095700 Sobic003G268900--Sobic002G367900 Sobic003G268900--Sobic002G217100 Sobic003G268900--Sobic006G210300 Sobic003G268900--Sobic002G197600 Sobic003G268900--Sobic004G244300 Sobic003G268900--Sobic009G167000 Sobic003G268900--Sobic004G281200 Sobic002G207300 Sobic002G207300 Sobic002G367900--Sobic002G207300 Sobic002G367900--Sobic004G065900 Sobic002G367900--Sobic003G268900 Sobic002G367900--Sobic001G095700 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G367900--Sobic002G197600 Sobic002G367900--Sobic006G210300 Sobic002G367900--Sobic004G244100 Sobic006G210300--Sobic002G217100 Sobic006G210300--Sobic004G281200 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic006G210300--Sobic001G462800 Sobic006G210300--Sobic002G367900 Sobic006G210300--Sobic010G016500 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400
Octagon: transcription factors


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