Gene annotation
Transcriptome id Sobic.004G337500.1,Sobic.004G337500.2
Synonym GATA8, Sb04g036520, BME3-ZF, BME3
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt C5XV62
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF194
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G25830 : GATA transcription factor 12
RAP-DB (Rice) LOC_Os02g56250.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020948 , Zm00025a032868 , Zm00025a022527
Brachypodium KQJ83828 , KQK01253
Barley HORVU6Hr1G088370.8 , HORVU6Hr1G088370.6 , HORVU6Hr1G088370.7 , HORVU6Hr1G088370.4 , HORVU6Hr1G088370.5 , HORVU6Hr1G088370.2
Wheat TraesCS6A02G374600 , TraesCS6D02G358700 , TraesCS6B02G412300
Populus -


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cDNA sequences
Sobic.004G337500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G423300 RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
2 Sobic.001G109100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAS family transcription factor domain containing protein, expressed -
3 Sobic.001G095750 - -
4 Sobic.004G281300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
5 Sobic.001G430700 expressed protein -
6 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
7 Sobic.002G009900 phytosulfokine receptor precursor, putative, expressed -
8 Sobic.001G145100 RIO1 family protein, expressed K08818: cell division cycle 2-like
9 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
10 Sobic.001G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
11 Sobic.004G006500 expressed protein -
12 Sobic.003G031800 ZOS1-04 - C2H2 zinc finger protein, expressed -
13 Sobic.003G252500 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
14 Sobic.002G185200 VQ domain containing protein, putative, expressed -
15 Sobic.009G020950 - -
16 Sobic.003G409300 NB-ARC domain containing protein, expressed -
17 Sobic.001G030600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
18 Sobic.002G418900 expressed protein -
19 Sobic.002G137800 gibberellin 20 oxidase 2, putative, expressed -
20 Sobic.009G028500 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic004G337500 Sobic004G337500 Sobic003G423300 Sobic003G423300 Sobic004G337500--Sobic003G423300 Sobic001G109100 Sobic001G109100 Sobic004G337500--Sobic001G109100 Sobic001G095750 Sobic001G095750 Sobic004G337500--Sobic001G095750 Sobic004G281300 Sobic004G281300 Sobic004G337500--Sobic004G281300 Sobic001G430700 Sobic001G430700 Sobic004G337500--Sobic001G430700 Sobic001G450800 Sobic001G450800 Sobic004G337500--Sobic001G450800 Sobic002G009900 Sobic002G009900 Sobic004G337500--Sobic002G009900 Sobic001G145100 Sobic001G145100 Sobic004G337500--Sobic001G145100 Sobic003G361300 Sobic003G361300 Sobic004G337500--Sobic003G361300 Sobic002G182800 Sobic002G182800 Sobic003G423300--Sobic002G182800 Sobic010G085400 Sobic010G085400 Sobic003G423300--Sobic010G085400 Sobic001G509400 Sobic001G509400 Sobic003G423300--Sobic001G509400 Sobic002G331450 Sobic002G331450 Sobic003G423300--Sobic002G331450 Sobic002G110200 Sobic002G110200 Sobic003G423300--Sobic002G110200 Sobic007G169600 Sobic007G169600 Sobic003G423300--Sobic007G169600 Sobic002G325600 Sobic002G325600 Sobic003G423300--Sobic002G325600 Sobic009G128300 Sobic009G128300 Sobic003G423300--Sobic009G128300 Sobic003G040800 Sobic003G040800 Sobic003G423300--Sobic003G040800 Sobic001G109100--Sobic004G337500 Sobic002G192101 Sobic002G192101 Sobic001G109100--Sobic002G192101 Sobic004G283400 Sobic004G283400 Sobic001G109100--Sobic004G283400 Sobic008G166700 Sobic008G166700 Sobic001G109100--Sobic008G166700 Sobic005G090600 Sobic005G090600 Sobic001G109100--Sobic005G090600 Sobic007G136700 Sobic007G136700 Sobic001G109100--Sobic007G136700 Sobic001G044800 Sobic001G044800 Sobic001G109100--Sobic001G044800 Sobic001G109100--Sobic004G281300 Sobic008G059400 Sobic008G059400 Sobic001G109100--Sobic008G059400 Sobic001G118900 Sobic001G118900 Sobic001G095750--Sobic001G118900 Sobic003G131500 Sobic003G131500 Sobic001G095750--Sobic003G131500 Sobic002G189000 Sobic002G189000 Sobic001G095750--Sobic002G189000 Sobic001G314300 Sobic001G314300 Sobic001G095750--Sobic001G314300 Sobic002G137800 Sobic002G137800 Sobic001G095750--Sobic002G137800 Sobic006G114200 Sobic006G114200 Sobic001G095750--Sobic006G114200 Sobic003G234800 Sobic003G234800 Sobic001G095750--Sobic003G234800 Sobic005G087800 Sobic005G087800 Sobic001G095750--Sobic005G087800 Sobic001G161200 Sobic001G161200 Sobic001G095750--Sobic001G161200 Sobic010G089700 Sobic010G089700 Sobic004G281300--Sobic010G089700 Sobic006G042200 Sobic006G042200 Sobic004G281300--Sobic006G042200 Sobic009G028500 Sobic009G028500 Sobic004G281300--Sobic009G028500 Sobic002G301800 Sobic002G301800 Sobic004G281300--Sobic002G301800 Sobic003G403500 Sobic003G403500 Sobic004G281300--Sobic003G403500 Sobic003G422700 Sobic003G422700 Sobic004G281300--Sobic003G422700 Sobic001G034300 Sobic001G034300 Sobic004G281300--Sobic001G034300 Sobic004G281300--Sobic004G337500 Sobic001G351100 Sobic001G351100 Sobic004G281300--Sobic001G351100 Sobic001G430700--Sobic001G450800 Sobic001G430700--Sobic003G361300 Sobic001G106000 Sobic001G106000 Sobic001G430700--Sobic001G106000 Sobic001G430700--Sobic003G040800 Sobic004G285100 Sobic004G285100 Sobic001G430700--Sobic004G285100 Sobic003G233900 Sobic003G233900 Sobic001G430700--Sobic003G233900 Sobic002G267800 Sobic002G267800 Sobic001G430700--Sobic002G267800 Sobic003G141800 Sobic003G141800 Sobic001G430700--Sobic003G141800 Sobic009G000700 Sobic009G000700 Sobic001G430700--Sobic009G000700 Sobic001G450800--Sobic003G361300 Sobic001G450800--Sobic001G430700 Sobic003G198150 Sobic003G198150 Sobic001G450800--Sobic003G198150 Sobic001G450800--Sobic001G106000 Sobic001G450800--Sobic003G040800 Sobic003G227600 Sobic003G227600 Sobic001G450800--Sobic003G227600 Sobic008G044750 Sobic008G044750 Sobic001G450800--Sobic008G044750 Sobic009G216900 Sobic009G216900 Sobic001G450800--Sobic009G216900 Sobic001G450800--Sobic004G285100 Sobic002G009900--Sobic001G450800 Sobic002G009900--Sobic001G430700 Sobic007G051600 Sobic007G051600 Sobic002G009900--Sobic007G051600 Sobic002G009900--Sobic003G361300 Sobic001G438800 Sobic001G438800 Sobic002G009900--Sobic001G438800 Sobic004G245900 Sobic004G245900 Sobic002G009900--Sobic004G245900 Sobic001G503400 Sobic001G503400 Sobic002G009900--Sobic001G503400 Sobic009G156600 Sobic009G156600 Sobic002G009900--Sobic009G156600 Sobic007G089533 Sobic007G089533 Sobic002G009900--Sobic007G089533 Sobic003G017200 Sobic003G017200 Sobic001G145100--Sobic003G017200 Sobic007G153001 Sobic007G153001 Sobic001G145100--Sobic007G153001 Sobic001G145100--Sobic001G106000 Sobic001G106200 Sobic001G106200 Sobic001G145100--Sobic001G106200 Sobic002G023900 Sobic002G023900 Sobic001G145100--Sobic002G023900 Sobic006G200200 Sobic006G200200 Sobic001G145100--Sobic006G200200 Sobic001G145100--Sobic003G040800 Sobic006G078350 Sobic006G078350 Sobic001G145100--Sobic006G078350 Sobic003G144200 Sobic003G144200 Sobic001G145100--Sobic003G144200 Sobic003G361300--Sobic001G450800 Sobic003G361300--Sobic001G430700 Sobic003G361300--Sobic003G198150 Sobic003G361300--Sobic008G044750 Sobic003G361300--Sobic003G227600 Sobic003G361300--Sobic003G040800 Sobic003G361300--Sobic009G216900 Sobic003G361300--Sobic003G233900 Sobic003G361300--Sobic009G128300
Octagon: transcription factors


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