Gene annotation
Transcriptome id Sobic.005G143900.1
Synonym Sb05g020900
Functional annotation regulator of chromosome condensation, putative, expressed
UniProt C5Y3W1
Pfam PF00415
Panther DB PTHR22870
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08710 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os11g34320.1 : regulator of chromosome condensation, putative, expressed
MaizeGDB (Corn) Zm00025a033548
Brachypodium KQJ88287
Barley HORVU1Hr1G016430.15 , HORVU1Hr1G016430.14 , HORVU1Hr1G016430.17 , HORVU1Hr1G016430.16 , HORVU1Hr1G016430.11 , HORVU1Hr1G016430.10 , HORVU1Hr1G016430.13 , HORVU1Hr1G016430.12 , HORVU1Hr1G016430.9 , HORVU1Hr1G016430.8 , HORVU1Hr1G016430.1 , HORVU1Hr1G016430.3 , HORVU1Hr1G016430.2 , HORVU1Hr1G016430.5 , HORVU1Hr1G016430.4 , HORVU1Hr1G016430.7 , HORVU1Hr1G016430.6
Wheat TraesCS1D02G078800 , TraesCS1D02G078800 , TraesCS1A02G076400 , TraesCS1A02G076400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G223700 MYB transcription factor, putative, expressed -
2 Sobic.006G251000 STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.006G264000 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
5 Sobic.010G226000 expressed protein -
6 Sobic.010G076300 - -
7 Sobic.006G101800 synaptonemal complex protein 2, putative, expressed -
8 Sobic.002G048700 BT1 family protein, putative, expressed -
9 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
10 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
11 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
12 Sobic.003G119700 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
14 Sobic.002G211800 AT-rich interaction region, putative, expressed -
15 Sobic.005G074000 OsFBX411 - F-box domain containing protein, expressed -
16 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
17 Sobic.001G092300 PPR repeat containing protein, expressed -
18 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
19 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
20 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ


Gene co-expression network
sample Sobic005G143900 Sobic005G143900 Sobic010G223700 Sobic010G223700 Sobic005G143900--Sobic010G223700 Sobic006G251000 Sobic006G251000 Sobic005G143900--Sobic006G251000 Sobic006G264000 Sobic006G264000 Sobic005G143900--Sobic006G264000 Sobic003G362600 Sobic003G362600 Sobic005G143900--Sobic003G362600 Sobic010G226000 Sobic010G226000 Sobic005G143900--Sobic010G226000 Sobic010G076300 Sobic010G076300 Sobic005G143900--Sobic010G076300 Sobic006G101800 Sobic006G101800 Sobic005G143900--Sobic006G101800 Sobic002G048700 Sobic002G048700 Sobic005G143900--Sobic002G048700 Sobic001G251200 Sobic001G251200 Sobic005G143900--Sobic001G251200 Sobic003G309200 Sobic003G309200 Sobic010G223700--Sobic003G309200 Sobic003G221900 Sobic003G221900 Sobic010G223700--Sobic003G221900 Sobic001G122832 Sobic001G122832 Sobic010G223700--Sobic001G122832 Sobic010G025300 Sobic010G025300 Sobic010G223700--Sobic010G025300 Sobic001G425800 Sobic001G425800 Sobic010G223700--Sobic001G425800 Sobic001G389100 Sobic001G389100 Sobic010G223700--Sobic001G389100 Sobic004G117900 Sobic004G117900 Sobic010G223700--Sobic004G117900 Sobic003G411900 Sobic003G411900 Sobic010G223700--Sobic003G411900 Sobic003G131400 Sobic003G131400 Sobic010G223700--Sobic003G131400 Sobic006G251000--Sobic001G251200 Sobic007G180600 Sobic007G180600 Sobic006G251000--Sobic007G180600 Sobic001G477700 Sobic001G477700 Sobic006G251000--Sobic001G477700 Sobic001G096000 Sobic001G096000 Sobic006G251000--Sobic001G096000 Sobic006G251000--Sobic005G143900 Sobic001G538700 Sobic001G538700 Sobic006G251000--Sobic001G538700 Sobic007G196900 Sobic007G196900 Sobic006G251000--Sobic007G196900 Sobic002G134600 Sobic002G134600 Sobic006G251000--Sobic002G134600 Sobic002G110300 Sobic002G110300 Sobic006G251000--Sobic002G110300 Sobic006G127600 Sobic006G127600 Sobic006G264000--Sobic006G127600 Sobic001G492300 Sobic001G492300 Sobic006G264000--Sobic001G492300 Sobic006G264000--Sobic005G143900 Sobic007G162100 Sobic007G162100 Sobic006G264000--Sobic007G162100 Sobic008G046500 Sobic008G046500 Sobic006G264000--Sobic008G046500 Sobic006G131000 Sobic006G131000 Sobic006G264000--Sobic006G131000 Sobic008G124900 Sobic008G124900 Sobic006G264000--Sobic008G124900 Sobic004G131800 Sobic004G131800 Sobic006G264000--Sobic004G131800 Sobic003G119700 Sobic003G119700 Sobic006G264000--Sobic003G119700 Sobic009G165700 Sobic009G165700 Sobic003G362600--Sobic009G165700 Sobic003G362600--Sobic001G251200 Sobic003G166750 Sobic003G166750 Sobic003G362600--Sobic003G166750 Sobic002G211800 Sobic002G211800 Sobic003G362600--Sobic002G211800 Sobic008G087866 Sobic008G087866 Sobic003G362600--Sobic008G087866 Sobic004G023000 Sobic004G023000 Sobic003G362600--Sobic004G023000 Sobic003G093800 Sobic003G093800 Sobic003G362600--Sobic003G093800 Sobic004G091100 Sobic004G091100 Sobic003G362600--Sobic004G091100 Sobic001G441400 Sobic001G441400 Sobic003G362600--Sobic001G441400 Sobic001G451400 Sobic001G451400 Sobic010G226000--Sobic001G451400 Sobic009G256400 Sobic009G256400 Sobic010G226000--Sobic009G256400 Sobic004G209700 Sobic004G209700 Sobic010G226000--Sobic004G209700 Sobic010G226000--Sobic009G165700 Sobic010G226000--Sobic003G166750 Sobic010G226000--Sobic001G441400 Sobic001G457800 Sobic001G457800 Sobic010G226000--Sobic001G457800 Sobic001G111850 Sobic001G111850 Sobic010G226000--Sobic001G111850 Sobic003G444800 Sobic003G444800 Sobic010G226000--Sobic003G444800 Sobic001G191600 Sobic001G191600 Sobic010G076300--Sobic001G191600 Sobic010G076300--Sobic002G134600 Sobic010G076300--Sobic010G223700 Sobic001G226700 Sobic001G226700 Sobic010G076300--Sobic001G226700 Sobic003G109700 Sobic003G109700 Sobic010G076300--Sobic003G109700 Sobic009G103600 Sobic009G103600 Sobic010G076300--Sobic009G103600 Sobic001G222250 Sobic001G222250 Sobic010G076300--Sobic001G222250 Sobic001G298600 Sobic001G298600 Sobic010G076300--Sobic001G298600 Sobic002G294800 Sobic002G294800 Sobic010G076300--Sobic002G294800 Sobic003G059750 Sobic003G059750 Sobic006G101800--Sobic003G059750 Sobic007G218000 Sobic007G218000 Sobic006G101800--Sobic007G218000 Sobic006G101800--Sobic010G226000 Sobic007G172200 Sobic007G172200 Sobic006G101800--Sobic007G172200 Sobic002G353600 Sobic002G353600 Sobic006G101800--Sobic002G353600 Sobic009G249700 Sobic009G249700 Sobic006G101800--Sobic009G249700 Sobic004G084700 Sobic004G084700 Sobic006G101800--Sobic004G084700 Sobic006G101800--Sobic003G444800 Sobic007G008900 Sobic007G008900 Sobic006G101800--Sobic007G008900 Sobic006G261400 Sobic006G261400 Sobic002G048700--Sobic006G261400 Sobic006G267600 Sobic006G267600 Sobic002G048700--Sobic006G267600 Sobic001G051700 Sobic001G051700 Sobic002G048700--Sobic001G051700 Sobic003G416700 Sobic003G416700 Sobic002G048700--Sobic003G416700 Sobic004G040200 Sobic004G040200 Sobic002G048700--Sobic004G040200 Sobic002G425500 Sobic002G425500 Sobic002G048700--Sobic002G425500 Sobic001G111600 Sobic001G111600 Sobic002G048700--Sobic001G111600 Sobic007G183900 Sobic007G183900 Sobic002G048700--Sobic007G183900 Sobic008G002500 Sobic008G002500 Sobic002G048700--Sobic008G002500 Sobic001G251200--Sobic003G362600 Sobic001G128300 Sobic001G128300 Sobic001G251200--Sobic001G128300 Sobic001G251200--Sobic009G165700 Sobic004G004300 Sobic004G004300 Sobic001G251200--Sobic004G004300 Sobic004G261600 Sobic004G261600 Sobic001G251200--Sobic004G261600 Sobic001G251200--Sobic001G451400 Sobic001G043100 Sobic001G043100 Sobic001G251200--Sobic001G043100 Sobic001G251200--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic001G251200--Sobic001G281100
Octagon: transcription factors


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